Debian package news for python-seqcluster

Marked for autoremoval on 12 June due to python-biopython: #1131072, #1135451

Sun, 24 May 2026 11:30:05 +0000

Version 1.2.9+ds-7 of python-seqcluster is marked for autoremoval from testing on Fri 12 Jun 2026. It depends (transitively) on python-biopython, affected by #1131072, #1135451. You should try to prevent the removal by fixing these RC bugs.

Problems while searching for a new upstream version

Sun, 24 May 2026 10:16:31 +0000

uscan had problems while searching for a new upstream version:

filenamemangle failed for python-seqcluster-1.2.9.tar.xz

Standards version of the package is outdated.

Tue, 31 Mar 2026 15:01:09 +0000

The package should be updated to follow the last version of Debian Policy (Standards-Version 4.7.4 instead of 4.7.3).

lintian reports 5 warnings

Thu, 22 Jan 2026 06:01:30 +0000

Lintian reports 5 warnings about this package. You should make the package lintian clean getting rid of them.

python-seqcluster 1.2.9+ds-7 MIGRATED to testing

Tue, 20 Jan 2026 05:03:46 +0000

From: [email protected]" target="_blank">Debian testing watch <[email protected]>
Subject: python-seqcluster 1.2.9+ds-7 MIGRATED to testing
To: [email protected]" target="_blank"> <[email protected]>
Date: Tue, 20 Jan 2026 04:39:13 +0000

FYI: The status of the python-seqcluster source package
in Debian's testing distribution has changed.

  Previous version: 1.2.9+ds-5
  Current version:  1.2.9+ds-7

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.

debian/patches: 3 patches to forward upstream

Wed, 14 Jan 2026 12:18:54 +0000

Among the 5 debian patches available in version 1.2.9+ds-7 of the package, we noticed the following issues:

3 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.

Accepted python-seqcluster 1.2.9+ds-7 (source all) into unstable

Tue, 13 Jan 2026 22:34:18 +0000

From: [email protected]" target="_blank">Debian FTP Masters <[email protected]>
To: [email protected]" target="_blank"> <[email protected]>
Subject: Accepted python-seqcluster 1.2.9+ds-7 (source all) into unstable
Date: Tue, 13 Jan 2026 22:34:15 +0000
Signed by: [email protected]" target="_blank">Alexandre Detiste <[email protected]>

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Format: 1.8
Date: Tue, 13 Jan 2026 22:28:51 +0100
Source: python-seqcluster
Binary: python-seqcluster-doc python3-seqcluster seqcluster
Architecture: source all
Version: 1.2.9+ds-7
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <[email protected]>
Changed-By: Alexandre Detiste <[email protected]>
Description:
 python-seqcluster-doc - analysis of small RNA in NGS data (documentation)
 python3-seqcluster - analysis of small RNA in NGS data
 seqcluster - analysis of small RNA in NGS data
Changes:
 python-seqcluster (1.2.9+ds-7) unstable; urgency=medium
 .
   * Team upload.
   * Retry Salsa CI with non-free source enabled
   * Remove extraneous python3-tz build-dep altoghether
   * Ratch-out generation of useless python3-pytz depency
   * Rewrite d/rules with newer & shorter syntax
   * Drop "Rules-Requires-Root: no": it is the default now
   * Bump Standards-Version to 4.7.3, drop Priority: tag
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Accepted python-seqcluster 1.2.9+ds-6 (source) into unstable

Tue, 13 Jan 2026 22:03:52 +0000

From: [email protected]" target="_blank">Debian FTP Masters <[email protected]>
To: [email protected]" target="_blank"> <[email protected]>
Subject: Accepted python-seqcluster 1.2.9+ds-6 (source) into unstable
Date: Tue, 13 Jan 2026 22:03:48 +0000
Signed by: [email protected]" target="_blank">Alexandre Detiste <[email protected]>

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Format: 1.8
Date: Tue, 13 Jan 2026 22:28:51 +0100
Source: python-seqcluster
Architecture: source
Version: 1.2.9+ds-6
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <[email protected]>
Changed-By: Alexandre Detiste <[email protected]>
Changes:
 python-seqcluster (1.2.9+ds-6) unstable; urgency=medium
 .
   * Team upload.
   * Retry Salsa CI with non-free source enabled
   * Remove extraneous python3-tz build-dep altoghether
   * Ratch-out generation of useless python3-pytz depency
   * Rewrite d/rules with newer & shorter syntax
   * Drop "Rules-Requires-Root: no": it is the default now
   * Bump Standards-Version to 4.7.3, drop Priority: tag
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python-seqcluster 1.2.9+ds-5 MIGRATED to testing

Tue, 22 Apr 2025 04:39:24 +0000

From: [email protected]" target="_blank">Debian testing watch <[email protected]>
Subject: python-seqcluster 1.2.9+ds-5 MIGRATED to testing
To: [email protected]" target="_blank"> <[email protected]>
Date: Tue, 22 Apr 2025 04:39:14 +0000

FYI: The status of the python-seqcluster source package
in Debian's testing distribution has changed.

  Previous version: 1.2.9+ds-4
  Current version:  1.2.9+ds-5

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.

Accepted python-seqcluster 1.2.9+ds-5 (source) into unstable

Fri, 11 Apr 2025 18:13:50 +0000

From: [email protected]" target="_blank">Debian FTP Masters <[email protected]>
To: [email protected]" target="_blank"> <[email protected]>
Subject: Accepted python-seqcluster 1.2.9+ds-5 (source) into unstable
Date: Fri, 11 Apr 2025 18:13:45 +0000
Signed by: [email protected]" target="_blank">Santiago Vila <[email protected]>

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Format: 1.8
Date: Fri, 11 Apr 2025 19:35:00 +0200
Source: python-seqcluster
Architecture: source
Version: 1.2.9+ds-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <[email protected]>
Changed-By: Santiago Vila <[email protected]>
Changes:
 python-seqcluster (1.2.9+ds-5) unstable; urgency=medium
 .
   * Team upload.
   [ Alexandre Detiste ]
   * remove dep on python3-dateutil
   [ Santiago Vila ]
   * Fix build with nocheck.
   * Update standards-version.
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python-seqcluster 1.2.9+ds-4 MIGRATED to testing

Thu, 29 Aug 2024 04:39:28 +0000

From: [email protected]" target="_blank">Debian testing watch <[email protected]>
Subject: python-seqcluster 1.2.9+ds-4 MIGRATED to testing
To: [email protected]" target="_blank"> <[email protected]>
Date: Thu, 29 Aug 2024 04:39:11 +0000

FYI: The status of the python-seqcluster source package
in Debian's testing distribution has changed.

  Previous version: 1.2.9+ds-3
  Current version:  1.2.9+ds-4

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.

Accepted python-seqcluster 1.2.9+ds-4 (source) into unstable

Fri, 23 Aug 2024 19:07:02 +0000

From: [email protected]" target="_blank">Debian FTP Masters <[email protected]>
To: [email protected]" target="_blank"> <[email protected]>
Subject: Accepted python-seqcluster 1.2.9+ds-4 (source) into unstable
Date: Fri, 23 Aug 2024 19:06:58 +0000
Signed by: [email protected]" target="_blank">Étienne Mollier <[email protected]>

-----BEGIN PGP SIGNED MESSAGE-----
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Format: 1.8
Date: Fri, 23 Aug 2024 19:41:04 +0200
Source: python-seqcluster
Architecture: source
Version: 1.2.9+ds-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Closes: 1076912
Changes:
 python-seqcluster (1.2.9+ds-4) unstable; urgency=medium
 .
   * Team upload.
 .
   [ Alexandre Detiste ]
   * remove runtime dependency on python3-nose
 .
   [ Étienne Mollier ]
   * scipy-1.12.patch: new: fix test failure due to binom_test deprecation.
     (Closes: #1076912)
   * d/control: declare compliance to standards version 4.7.0.
   * d/copyright: clarify residence in contrib due to vienna-rna.
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python-seqcluster 1.2.9+ds-3 MIGRATED to testing

Tue, 02 Apr 2024 04:39:55 +0000

From: [email protected]" target="_blank">Debian testing watch <[email protected]>
Subject: python-seqcluster 1.2.9+ds-3 MIGRATED to testing
To: [email protected]" target="_blank"> <[email protected]>
Date: Tue, 02 Apr 2024 04:39:17 +0000

FYI: The status of the python-seqcluster source package
in Debian's testing distribution has changed.

  Previous version: (not in testing)
  Current version:  1.2.9+ds-3

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.

python-seqcluster REMOVED from testing

Fri, 08 Mar 2024 04:39:19 +0000

From: [email protected]" target="_blank">Debian testing watch <[email protected]>
Subject: python-seqcluster REMOVED from testing
To: [email protected]" target="_blank"> <[email protected]>
Date: Fri, 08 Mar 2024 04:39:10 +0000

FYI: The status of the python-seqcluster source package
in Debian's testing distribution has changed.

  Previous version: 1.2.9+ds-3
  Current version:  (not in testing)
  Hint: <https://release.debian.org/britney/hints/auto-removals>
    # 1061344,1062368,1064245 in dlib,emboss,ncbi-tools6

The script that generates this mail tries to extract removal
reasons from comments in the britney hint files. Those comments
were not originally meant to be machine readable, so if the
reason for removing your package seems to be nonsense, it is
probably the reporting script that got confused. Please check the
actual hints file before you complain about meaningless removals.

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.

python-seqcluster 1.2.9+ds-3 MIGRATED to testing

Mon, 13 Feb 2023 04:42:03 +0000

From: [email protected]" target="_blank">Debian testing watch <[email protected]>
Subject: python-seqcluster 1.2.9+ds-3 MIGRATED to testing
To: [email protected]" target="_blank"> <[email protected]>
Date: Mon, 13 Feb 2023 04:39:19 +0000

FYI: The status of the python-seqcluster source package
in Debian's testing distribution has changed.

  Previous version: (not in testing)
  Current version:  1.2.9+ds-3

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.

python-seqcluster 1.2.9+ds-3 MIGRATED to testing

Mon, 13 Feb 2023 04:39:33 +0000

From: [email protected]" target="_blank">Debian testing watch <[email protected]>
Subject: python-seqcluster 1.2.9+ds-3 MIGRATED to testing
To: [email protected]" target="_blank"> <[email protected]>
Date: Mon, 13 Feb 2023 04:39:19 +0000

FYI: The status of the python-seqcluster source package
in Debian's testing distribution has changed.

  Previous version: (not in testing)
  Current version:  1.2.9+ds-3

-- 
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python-seqcluster REMOVED from testing

Mon, 23 Jan 2023 04:43:23 +0000

From: [email protected]" target="_blank">Debian testing watch <[email protected]>
Subject: python-seqcluster REMOVED from testing
To: [email protected]" target="_blank"> <[email protected]>
Date: Mon, 23 Jan 2023 04:39:17 +0000

FYI: The status of the python-seqcluster source package
in Debian's testing distribution has changed.

  Previous version: 1.2.8+ds-2
  Current version:  (not in testing)
  Hint: <https://release.debian.org/britney/hints/auto-removals>
    # 1025746 in vienna-rna

The script that generates this mail tries to extract removal
reasons from comments in the britney hint files. Those comments
were not originally meant to be machine readable, so if the
reason for removing your package seems to be nonsense, it is
probably the reporting script that got confused. Please check the
actual hints file before you complain about meaningless removals.

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.

Accepted python-seqcluster 1.2.9+ds-3 (source) into unstable

Sat, 21 Jan 2023 10:10:34 +0000

From: [email protected]" target="_blank">Debian FTP Masters <[email protected]>
To: [email protected]" target="_blank"> <[email protected]>
Subject: Accepted python-seqcluster 1.2.9+ds-3 (source) into unstable
Date: Sat, 21 Jan 2023 10:10:29 +0000
Signed by: [email protected]" target="_blank">Sascha Steinbiss <[email protected]>

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Date: Sat, 21 Jan 2023 10:04:10 +0100
Source: python-seqcluster
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Version: 1.2.9+ds-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <[email protected]>
Changed-By: Sascha Steinbiss <[email protected]>
Closes: 1018577
Changes:
 python-seqcluster (1.2.9+ds-3) unstable; urgency=medium
 .
   * Team upload.
   * Add patch to switch tests from nose to nose2.
     Closes: #1018577
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Accepted python-seqcluster 1.2.9+ds-1 (source all) into unstable

Thu, 19 Jan 2023 07:51:27 +0000

From: [email protected]" target="_blank">Debian FTP Masters <[email protected]>
To: [email protected]" target="_blank"> <[email protected]>
Subject: Accepted python-seqcluster 1.2.9+ds-1 (source all) into unstable
Date: Thu, 19 Jan 2023 07:51:22 +0000
Signed by: [email protected]" target="_blank">Andreas Tille <[email protected]>

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Date: Wed, 18 Jan 2023 16:52:44 +0100
Source: python-seqcluster
Binary: python-seqcluster-doc python3-seqcluster seqcluster
Architecture: source all
Version: 1.2.9+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
 python-seqcluster-doc - analysis of small RNA in NGS data (documentation)
 python3-seqcluster - analysis of small RNA in NGS data
 seqcluster - analysis of small RNA in NGS data
Changes:
 python-seqcluster (1.2.9+ds-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
 .
   [ Andreas Tille ]
   * Set upstream metadata fields: Repository-Browse.
   * d/watch: Create proper download file name
   * Update lintian override info format in d/source/lintian-overrides on line 1.
   * Drop removed file from d/copyright
   * Standards-Version: 4.6.2 (routine-update)
 .
   [ Étienne Mollier ]
   * d/watch: move to git mode following github changes.
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python-seqcluster 1.2.8+ds-2 MIGRATED to testing

Sun, 24 Jul 2022 04:52:15 +0000

From: [email protected]" target="_blank">Debian testing watch <[email protected]>
Subject: python-seqcluster 1.2.8+ds-2 MIGRATED to testing
To: [email protected]" target="_blank"> <[email protected]>
Date: Sun, 24 Jul 2022 04:39:13 +0000

FYI: The status of the python-seqcluster source package
in Debian's testing distribution has changed.

  Previous version: (not in testing)
  Current version:  1.2.8+ds-2

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.

python-seqcluster REMOVED from testing

Sat, 23 Jul 2022 04:50:58 +0000

From: [email protected]" target="_blank">Debian testing watch <[email protected]>
Subject: python-seqcluster REMOVED from testing
To: [email protected]" target="_blank"> <[email protected]>
Date: Sat, 23 Jul 2022 04:39:12 +0000

FYI: The status of the python-seqcluster source package
in Debian's testing distribution has changed.

  Previous version: 1.2.8+ds-2
  Current version:  (not in testing)
  Hint: <https://release.debian.org/britney/hints/auto-removals>
    # 1012482 in rdflib

The script that generates this mail tries to extract removal
reasons from comments in the britney hint files. Those comments
were not originally meant to be machine readable, so if the
reason for removing your package seems to be nonsense, it is
probably the reporting script that got confused. Please check the
actual hints file before you complain about meaningless removals.

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.

python-seqcluster 1.2.8+ds-2 MIGRATED to testing

Wed, 13 Apr 2022 04:39:19 +0000

From: [email protected]" target="_blank">Debian testing watch <[email protected]>
Subject: python-seqcluster 1.2.8+ds-2 MIGRATED to testing
To: [email protected]" target="_blank"> <[email protected]>
Date: Wed, 13 Apr 2022 04:39:12 +0000

FYI: The status of the python-seqcluster source package
in Debian's testing distribution has changed.

  Previous version: 1.2.8+ds-1
  Current version:  1.2.8+ds-2

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.

Accepted python-seqcluster 1.2.8+ds-2 (source all) into unstable

Fri, 08 Apr 2022 06:04:43 +0000

From: [email protected]" target="_blank">Debian FTP Masters <[email protected]>
To: [email protected]" target="_blank"> <[email protected]>
Subject: Accepted python-seqcluster 1.2.8+ds-2 (source all) into unstable
Date: Fri, 08 Apr 2022 06:04:40 +0000
Signed by: [email protected]" target="_blank">Andreas Tille <[email protected]>

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Thu, 07 Apr 2022 20:43:50 +0700
Source: python-seqcluster
Binary: python-seqcluster-doc python3-seqcluster seqcluster
Architecture: source all
Version: 1.2.8+ds-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <[email protected]>
Changed-By: Lance Lin <[email protected]>
Description:
 python-seqcluster-doc - analysis of small RNA in NGS data (documentation)
 python3-seqcluster - analysis of small RNA in NGS data
 seqcluster - analysis of small RNA in NGS data
Closes: 993623
Changes:
 python-seqcluster (1.2.8+ds-2) unstable; urgency=medium
 .
   * Team upload.
 .
   [ Lance Lin ]
   * d/control: remove recommonmark & added myst-parser (Closes: #993623)
   * Added d/patches/remove_commonmark.patch to remove recommonmark code
 .
   [ Andreas Tille ]
   * Remove trailing whitespace in debian/changelog (routine-update)
   * Section: contrib/python for Python3 package
   * Fix lintian override
   * For packages in contrib / non-free CI is not working since non-free is
     not in sources.list.  Thus deactivating d/salsa-ci.yml which would be
     added by future routine-update runs otherwise
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python-seqcluster 1.2.8+ds-1 MIGRATED to testing

Wed, 06 Oct 2021 05:02:38 +0000

From: [email protected]" target="_blank">Debian testing watch <[email protected]>
Subject: python-seqcluster 1.2.8+ds-1 MIGRATED to testing
To: [email protected]" target="_blank"> <[email protected]>
Date: Wed, 06 Oct 2021 04:39:10 +0000

FYI: The status of the python-seqcluster source package
in Debian's testing distribution has changed.

  Previous version: 1.2.7+ds-1
  Current version:  1.2.8+ds-1

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.

Accepted python-seqcluster 1.2.8+ds-1 (source all) into unstable

Fri, 01 Oct 2021 10:19:07 +0000

From: [email protected]" target="_blank">Debian FTP Masters <[email protected]>
To: [email protected]" target="_blank"> <[email protected]>
Subject: Accepted python-seqcluster 1.2.8+ds-1 (source all) into unstable
Date: Fri, 01 Oct 2021 10:19:04 +0000
Signed by: [email protected]" target="_blank">Andreas Tille <[email protected]>

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Date: Fri, 01 Oct 2021 11:28:59 +0200
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Architecture: source all
Version: 1.2.8+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
 python-seqcluster-doc - analysis of small RNA in NGS data (documentation)
 python3-seqcluster - analysis of small RNA in NGS data
 seqcluster - analysis of small RNA in NGS data
Changes:
 python-seqcluster (1.2.8+ds-1) unstable; urgency=medium
 .
   * Team upload.
   * Add salsa-ci file (routine-update)
   * Set upstream metadata fields: Bug-Database, Bug-Submit.
   * Standards-Version: 4.6.0 (routine-update)
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python-seqcluster 1.2.7+ds-1 MIGRATED to testing

Mon, 07 Dec 2020 04:57:46 +0000

From: [email protected]" target="_blank">Debian testing watch <[email protected]>
Subject: python-seqcluster 1.2.7+ds-1 MIGRATED to testing
To: [email protected]" target="_blank"> <[email protected]>
Date: Mon, 07 Dec 2020 04:39:13 +0000

FYI: The status of the python-seqcluster source package
in Debian's testing distribution has changed.

  Previous version: (not in testing)
  Current version:  1.2.7+ds-1

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.

Accepted python-seqcluster 1.2.7+ds-1 (source all) into unstable, unstable

Mon, 09 Nov 2020 23:00:14 +0000

From: [email protected]" target="_blank">Debian FTP Masters <[email protected]>
To: [email protected]" target="_blank"> <[email protected]>
Subject: Accepted python-seqcluster 1.2.7+ds-1 (source all) into unstable, unstable
Date: Mon, 09 Nov 2020 23:00:11 +0000
Signed by: [email protected]" target="_blank">Steffen Moeller <[email protected]>

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Format: 1.8
Date: Tue, 07 Jul 2020 20:21:43 +0200
Source: python-seqcluster
Binary: python-seqcluster-doc python3-seqcluster seqcluster
Architecture: source all
Version: 1.2.7+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <[email protected]>
Changed-By: Steffen Moeller <[email protected]>
Description:
 python-seqcluster-doc - analysis of small RNA in NGS data (documentation)
 python3-seqcluster - analysis of small RNA in NGS data
 seqcluster - analysis of small RNA in NGS data
Closes: 903345
Changes:
 python-seqcluster (1.2.7+ds-1) unstable; urgency=medium
 .
   * Initial release (Closes: #903345)
 .
     Upon rejection clarified the dual license of ./misc/js/dragscrollable.js
     and removed the jquery-ui.css from the source tree.
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