Debian package news for python-biopython

Depends on packages which need a new maintainer

Sun, 24 May 2026 10:31:06 +0000

The packages that python-biopython depends on which need a new maintainer are:

w3c-sgml-lib (#739087)
- Depends: w3c-sgml-lib

Marked for autoremoval on 12 June: #1131072, #1135451

Sun, 24 May 2026 10:17:00 +0000

Version 1.86+dfsg-1 of python-biopython is marked for autoremoval from testing on Fri 12 Jun 2026. It is affected by #1131072, #1135451. The removal of python-biopython will also cause the removal of (transitive) reverse dependencies: ariba, augur, busco, changeo, cutesv, elpa-snakemake, gasic, graphlan, gubbins, idseq-bench, insilicoseq, kaptive, kleborate, mcaller, mdanalysis, metaphlan, mirtop, nanofilt, nanolyse, nanostat, ncbi-acc-download, optimir, pairtools, parsnp, peptidebuilder, presto, pychopper, pyensembl, pyfastx, python-bcbio-gff, python-bioframe, python-cai, python-cgecore, python-cooler, python-datacache, python-dynasor, python-gffutils, python-nanoget, python-pauvre, python-prodigy, python-pyani, python-pyfaidx, python-seqcluster, python-treetime, qcat, readucks, recan, resfinder, seqmagick, seqsero, snakemake, srst2, virulencefinder, xpore, yanagiba. You should try to prevent the removal by fixing these RC bugs.

The package has not entered testing even though the delay is over

Sun, 24 May 2026 09:31:59 +0000

The package has not entered testing even though the 5-day delay is over. Check why.

Does not build reproducibly during testing

Sun, 24 May 2026 08:02:26 +0000

A package building reproducibly enables third parties to verify that the source matches the distributed binaries. It has been identified that this source package produced different results, failed to build or had other issues in a test environment. Please read about how to improve the situation!

debian/patches: 1 patch to forward upstream

Thu, 14 May 2026 09:03:17 +0000

Among the 4 debian patches available in version 1.87+dfsg-1 of the package, we noticed the following issues:

1 patch where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.

1 low-priority security issue in trixie

Wed, 13 May 2026 23:18:06 +0000

There is 1 open security issue in trixie.

1 issue left for the package maintainer to handle:

CVE-2025-68463: (needs triaging) Bio.Entrez in Biopython through 186 allows doctype XXE.

You can find information about how to handle this issue in the security team's documentation.

1 security issue in forky

Wed, 13 May 2026 23:18:06 +0000

There is 1 open security issue in forky.

1 important issue:

CVE-2025-68463: Bio.Entrez in Biopython through 186 allows doctype XXE.

1 low-priority security issue in bookworm

Wed, 13 May 2026 23:18:06 +0000

There is 1 open security issue in bookworm.

1 issue left for the package maintainer to handle:

CVE-2025-68463: (needs triaging) Bio.Entrez in Biopython through 186 allows doctype XXE.

You can find information about how to handle this issue in the security team's documentation.

Accepted python-biopython 1.87+dfsg-1 (source) into unstable

Wed, 13 May 2026 14:39:07 +0000

From: [email protected]" target="_blank">Debian FTP Masters <[email protected]>
To: [email protected]" target="_blank"> <[email protected]>
Subject: Accepted python-biopython 1.87+dfsg-1 (source) into unstable
Date: Wed, 13 May 2026 14:39:05 +0000
Signed by: [email protected]" target="_blank">Karsten Schöke <[email protected]>

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Format: 1.8
Date: Wed, 13 May 2026 15:39:59 +0200
Source: python-biopython
Built-For-Profiles: nocheck
Architecture: source
Version: 1.87+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <[email protected]>
Changed-By: Karsten Schöke <[email protected]>
Closes: 1123673 1131072 1135451
Changes:
 python-biopython (1.87+dfsg-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
     Fix CVE-2025-68463 (Closes: #1123673, #1131072)
   * Standards-Version: 4.7.4 (routine-update)
   * d/rules: Sphinx no longer aborts the build on warnings. (Closes: #1135451)
   * d/t/control: Remove obsolete skip-not-installable option
   * d/rules: Updated the link to the Debian mathjax jslib after upstream change.
   * d/control: wrap-and-sort and change B-D
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python-biopython 1.86+dfsg-1 MIGRATED to testing

Sat, 01 Nov 2025 04:50:20 +0000

From: [email protected]" target="_blank">Debian testing watch <[email protected]>
Subject: python-biopython 1.86+dfsg-1 MIGRATED to testing
To: [email protected]" target="_blank"> <[email protected]>
Date: Sat, 01 Nov 2025 04:39:16 +0000

FYI: The status of the python-biopython source package
in Debian's testing distribution has changed.

  Previous version: 1.85+dfsg-5
  Current version:  1.86+dfsg-1

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.

Accepted python-biopython 1.86+dfsg-1 (source) into unstable

Wed, 29 Oct 2025 23:26:19 +0000

From: [email protected]" target="_blank">Debian FTP Masters <[email protected]>
To: [email protected]" target="_blank"> <[email protected]>
Subject: Accepted python-biopython 1.86+dfsg-1 (source) into unstable
Date: Wed, 29 Oct 2025 23:26:15 +0000
Signed by: [email protected]" target="_blank">Étienne Mollier <[email protected]>

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Date: Wed, 29 Oct 2025 23:16:49 +0100
Source: python-biopython
Architecture: source
Version: 1.86+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Changes:
 python-biopython (1.86+dfsg-1) unstable; urgency=medium
 .
   * New upstream version 1.86+dfsg
   * croak-on-muscle5.patch: delete: affected code erased upstream.
   * muscle3.patch: delete: affected code erased upstream.
   * skip-scipy-in-codonalign.patch: delete: #1086108 is resolved.
   * bwa-output.patch: delete: affected code erased upstream.
   * d/control: drop redundant Rules-Requires-Root: no.
   * d/rules: cleanup list of excluded tests.
   * d/{rules,t/run-unit-test}: skip test_pairwise_aligner.py on i386.
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python-biopython 1.85+dfsg-5 MIGRATED to testing

Tue, 16 Sep 2025 05:03:13 +0000

From: [email protected]" target="_blank">Debian testing watch <[email protected]>
Subject: python-biopython 1.85+dfsg-5 MIGRATED to testing
To: [email protected]" target="_blank"> <[email protected]>
Date: Tue, 16 Sep 2025 04:39:15 +0000

FYI: The status of the python-biopython source package
in Debian's testing distribution has changed.

  Previous version: 1.85+dfsg-4
  Current version:  1.85+dfsg-5

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.

Accepted python-biopython 1.85+dfsg-5 (source) into unstable

Sun, 14 Sep 2025 00:08:18 +0000

From: [email protected]" target="_blank">Debian FTP Masters <[email protected]>
To: [email protected]" target="_blank"> <[email protected]>
Subject: Accepted python-biopython 1.85+dfsg-5 (source) into unstable
Date: Sun, 14 Sep 2025 00:08:15 +0000
Signed by: [email protected]" target="_blank">Étienne Mollier <[email protected]>

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Hash: SHA512

Format: 1.8
Date: Sat, 13 Sep 2025 12:12:17 +0200
Source: python-biopython
Architecture: source
Version: 1.85+dfsg-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Closes: 1103472 1114298
Changes:
 python-biopython (1.85+dfsg-5) unstable; urgency=medium
 .
   * bwa-output.patch: new: fix a test failure. (Closes: #1114298)
   * d/control: build depends on python3-numpy-dev:any.
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   * d/watch: update to file format version 5.
   * d/patches/*: normalize dep3 headers.
   * d/python3-biopython.lintian-overrides: delete.
     The spelling override that was within is not needed anymore.
   * d/control: uncondionally deploy some build-dependencies.
     Several of the packages that were initially marked as <!nocheck>
     turned out to be actually needed outside check context. (Closes: #1103472)
   * d/rules: isolate a code segment irrelevant with nocheck profile.
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python-biopython 1.85+dfsg-4 MIGRATED to testing

Tue, 15 Apr 2025 04:51:32 +0000

From: [email protected]" target="_blank">Debian testing watch <[email protected]>
Subject: python-biopython 1.85+dfsg-4 MIGRATED to testing
To: [email protected]" target="_blank"> <[email protected]>
Date: Tue, 15 Apr 2025 04:39:12 +0000

FYI: The status of the python-biopython source package
in Debian's testing distribution has changed.

  Previous version: 1.85+dfsg-2
  Current version:  1.85+dfsg-4

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.

Accepted python-biopython 1.85+dfsg-4 (source) into unstable

Fri, 11 Apr 2025 19:52:35 +0000

From: [email protected]" target="_blank">Debian FTP Masters <[email protected]>
To: [email protected]" target="_blank"> <[email protected]>
Subject: Accepted python-biopython 1.85+dfsg-4 (source) into unstable
Date: Fri, 11 Apr 2025 19:52:30 +0000
Signed by: [email protected]" target="_blank">Santiago Vila <[email protected]>

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Architecture: source
Version: 1.85+dfsg-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <[email protected]>
Changed-By: Santiago Vila <[email protected]>
Changes:
 python-biopython (1.85+dfsg-4) unstable; urgency=medium
 .
   * Team upload.
   * Restore deleted line as it seems to break autopkgtests.
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Accepted python-biopython 1.85+dfsg-3 (source) into unstable

Fri, 11 Apr 2025 18:13:28 +0000

From: [email protected]" target="_blank">Debian FTP Masters <[email protected]>
To: [email protected]" target="_blank"> <[email protected]>
Subject: Accepted python-biopython 1.85+dfsg-3 (source) into unstable
Date: Fri, 11 Apr 2025 18:13:23 +0000
Signed by: [email protected]" target="_blank">Santiago Vila <[email protected]>

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Format: 1.8
Date: Fri, 11 Apr 2025 19:00:00 +0200
Source: python-biopython
Architecture: source
Version: 1.85+dfsg-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <[email protected]>
Changed-By: Santiago Vila <[email protected]>
Changes:
 python-biopython (1.85+dfsg-3) unstable; urgency=medium
 .
   * Team upload.
   * Fix build with nocheck.
   * Update standards-version.
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python-biopython 1.85+dfsg-2 MIGRATED to testing

Thu, 13 Feb 2025 04:39:16 +0000

From: [email protected]" target="_blank">Debian testing watch <[email protected]>
Subject: python-biopython 1.85+dfsg-2 MIGRATED to testing
To: [email protected]" target="_blank"> <[email protected]>
Date: Thu, 13 Feb 2025 04:39:10 +0000

FYI: The status of the python-biopython source package
in Debian's testing distribution has changed.

  Previous version: 1.84+dfsg-4
  Current version:  1.85+dfsg-2

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.

Accepted python-biopython 1.85+dfsg-2 (source) into unstable

Thu, 06 Feb 2025 15:15:31 +0000

From: [email protected]" target="_blank">Debian FTP Masters <[email protected]>
To: [email protected]" target="_blank"> <[email protected]>
Subject: Accepted python-biopython 1.85+dfsg-2 (source) into unstable
Date: Thu, 06 Feb 2025 15:15:27 +0000
Signed by: [email protected]" target="_blank">Michael R. Crusoe <[email protected]>

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Date: Thu, 06 Feb 2025 15:44:29 +0100
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Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <[email protected]>
Changed-By: Michael R. Crusoe <[email protected]>
Closes: 1095105
Changes:
 python-biopython (1.85+dfsg-2) unstable; urgency=medium
 .
   * Skip the Tutorial test on s390x. Closes: #1095105.
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Accepted python-biopython 1.85+dfsg-1 (source) into unstable

Wed, 29 Jan 2025 17:51:56 +0000

From: [email protected]" target="_blank">Debian FTP Masters <[email protected]>
To: [email protected]" target="_blank"> <[email protected]>
Subject: Accepted python-biopython 1.85+dfsg-1 (source) into unstable
Date: Wed, 29 Jan 2025 17:51:52 +0000
Signed by: [email protected]" target="_blank">Michael R. Crusoe <[email protected]>

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Date: Wed, 29 Jan 2025 17:02:52 +0100
Source: python-biopython
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Version: 1.85+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <[email protected]>
Changed-By: Michael R. Crusoe <[email protected]>
Changes:
 python-biopython (1.85+dfsg-1) unstable; urgency=medium
 .
   * Team upload
 .
   [ Étienne Mollier ]
   * d/t/mini-ccd.cif: include definition of SO4 molecule.
     The definition originates from PDB's components.cif as of 2024-10-30.
     This resolves the noisy warning when running test_PDB_DSSP.
 .
   [ Michael R. Crusoe ]
   * New upstream version
   * Refreshed patches.
   * Added python3-igraph as a recommend package and test dependency for
     use with Bio.Phylo.
   * d/rules: resume running the Tutorial tests everywhere.
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python-biopython 1.84+dfsg-4 MIGRATED to testing

Sat, 02 Nov 2024 04:39:19 +0000

From: [email protected]" target="_blank">Debian testing watch <[email protected]>
Subject: python-biopython 1.84+dfsg-4 MIGRATED to testing
To: [email protected]" target="_blank"> <[email protected]>
Date: Sat, 02 Nov 2024 04:39:10 +0000

FYI: The status of the python-biopython source package
in Debian's testing distribution has changed.

  Previous version: 1.84+dfsg-3
  Current version:  1.84+dfsg-4

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.

Accepted python-biopython 1.84+dfsg-4 (source) into unstable

Thu, 31 Oct 2024 08:11:44 +0000

From: [email protected]" target="_blank">Debian FTP Masters <[email protected]>
To: [email protected]" target="_blank"> <[email protected]>
Subject: Accepted python-biopython 1.84+dfsg-4 (source) into unstable
Date: Thu, 31 Oct 2024 08:11:39 +0000
Signed by: [email protected]" target="_blank">Étienne Mollier <[email protected]>

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Format: 1.8
Date: Wed, 30 Oct 2024 21:45:42 +0100
Source: python-biopython
Architecture: source
Version: 1.84+dfsg-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Closes: 1086156
Changes:
 python-biopython (1.84+dfsg-4) unstable; urgency=medium
 .
   * skip-scipy-in-codonalign.patch: comment about #1086108.
     Bug #1086108 may be related and the patch removed once resolved.
   * d/t/mini-ccd.cif: new: provide subset of data needed by the libcifpp.
   * d/copyright: document origin of mini-ccd.cif.
   * d/rules: configure libcifpp to use the mini-ccd.cif.
     By instructing the libcifpp to use a local data directory with the
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     tests depending on a working libcifpp are back in "fair enough"
     working conditions.  The original components.cif is more than 400M and
     changes constantly, making it problematic to maintain through Debian
     packages while at the same time keeping it useful for end users,
     Thanks to Maarten L. Hekkelman <[email protected]> (Closes: #1086156)
   * d/t/run-unit-test: also fix PDB/dssp for autopkgtest.
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python-biopython 1.84+dfsg-3 MIGRATED to testing

Sun, 20 Oct 2024 04:39:26 +0000

From: [email protected]" target="_blank">Debian testing watch <[email protected]>
Subject: python-biopython 1.84+dfsg-3 MIGRATED to testing
To: [email protected]" target="_blank"> <[email protected]>
Date: Sun, 20 Oct 2024 04:39:10 +0000

FYI: The status of the python-biopython source package
in Debian's testing distribution has changed.

  Previous version: 1.83+dfsg1-5
  Current version:  1.84+dfsg-3

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.

Accepted python-biopython 1.84+dfsg-3 (source) into unstable

Fri, 18 Oct 2024 10:49:52 +0000

From: [email protected]" target="_blank">Debian FTP Masters <[email protected]>
To: [email protected]" target="_blank"> <[email protected]>
Subject: Accepted python-biopython 1.84+dfsg-3 (source) into unstable
Date: Fri, 18 Oct 2024 10:49:48 +0000
Signed by: [email protected]" target="_blank">Étienne Mollier <[email protected]>

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Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Changes:
 python-biopython (1.84+dfsg-3) unstable; urgency=medium
 .
   * skip-scipy-in-codonalign.patch: also skip on mips64el.
     The symptom of scipy processing hanging up appeared already in
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Accepted python-biopython 1.84+dfsg-2 (source) into unstable

Wed, 25 Sep 2024 19:21:20 +0000

From: [email protected]" target="_blank">Debian FTP Masters <[email protected]>
To: [email protected]" target="_blank"> <[email protected]>
Subject: Accepted python-biopython 1.84+dfsg-2 (source) into unstable
Date: Wed, 25 Sep 2024 19:21:16 +0000
Signed by: [email protected]" target="_blank">Étienne Mollier <[email protected]>

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Version: 1.84+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Changes:
 python-biopython (1.84+dfsg-2) unstable; urgency=medium
 .
   * d/t/run-unit-test: disable PDB_binary_cif for s390x in autopkgtest too.
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Accepted python-biopython 1.84+dfsg-1 (source) into unstable

Mon, 23 Sep 2024 18:19:47 +0000

From: [email protected]" target="_blank">Debian FTP Masters <[email protected]>
To: [email protected]" target="_blank"> <[email protected]>
Subject: Accepted python-biopython 1.84+dfsg-1 (source) into unstable
Date: Mon, 23 Sep 2024 18:19:43 +0000
Signed by: [email protected]" target="_blank">Étienne Mollier <[email protected]>

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Mon, 23 Sep 2024 19:04:17 +0200
Source: python-biopython
Architecture: source
Version: 1.84+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Changes:
 python-biopython (1.84+dfsg-1) unstable; urgency=medium
 .
   * Migrate Biopython 1.84 from experimental to unstable.
   * d/salsa-ci.yml: disable build path variation in reprotest.
   * d/rules: normalize HOME; this stabilizes build reproducibility.
   * d/rules: skip PDB_bcif on s390x architecture.
 .
 python-biopython (1.84+dfsg-1~0exp1) experimental; urgency=medium
 .
   * New upstream version 1.84+dfsg
   * d/watch: fix debian version mangling.
   * d/copyright: update copyright years.
   * fix-use-of-unversioned-python.patch: delete: hunk removed upstream.
   * reproduciblebuild.patch: delete: file disappeared upstream.
   * croak-on-muscle5.patch: refresh.
   * muscle3.patch: unfuzz.
   * seqxml-parser.patch: delete: issue fixed upstream.
   * skip-scipy-in-codonalign.patch: unfuzz.
   * d/rules: condensate dh_installdocs target to ease readability.
   * d/rules: cleanup irrelevant comments and more readable dh_auto_test.
   * d/t/run-unit-test: Tutorial.tex does not exist anymore.
   * d/t/run-unit-test: new PDB tests require compressed bcif files.
   * d/rules: replace distclean target by clean in Doc/.
   * d/control: documentation now depends on Sphinx and side modules.
   * d/rules: explicitly make html documentation.
   * d/copyright: do not advertise LGPL since it is not in use.
   * d/rules: cleanup documentation from embeding and privacy breaches.
   * d/control: documentation depends on libjs-sphinx and libjs-jquery.
   * d/python-biopython-doc.docs: install sphinx html artifacts.
   * d/python-biopython-doc.doc-base: update location of the Tutorial.
   * d/python-biopython-doc.examples: new: install examples.
   * d/python-biopython-doc.lintian-overrides: flag another empty test file.
   * fix-type-cast-i386.patch: new: fix PDB test failure on 32-bit.
   * d/TODO: build reproducibility needs fixing.
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python-biopython 1.83+dfsg1-5 MIGRATED to testing

Fri, 20 Sep 2024 05:03:16 +0000

From: [email protected]" target="_blank">Debian testing watch <[email protected]>
Subject: python-biopython 1.83+dfsg1-5 MIGRATED to testing
To: [email protected]" target="_blank"> <[email protected]>
Date: Fri, 20 Sep 2024 04:39:15 +0000

FYI: The status of the python-biopython source package
in Debian's testing distribution has changed.

  Previous version: 1.83+dfsg1-4
  Current version:  1.83+dfsg1-5

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.

Accepted python-biopython 1.84+dfsg-1~0exp1 (source) into experimental

Mon, 16 Sep 2024 21:27:30 +0000

From: [email protected]" target="_blank">Debian FTP Masters <[email protected]>
To: [email protected]" target="_blank"> <[email protected]> , [email protected]" target="_blank"> <[email protected]>
Subject: Accepted python-biopython 1.84+dfsg-1~0exp1 (source) into experimental
Date: Mon, 16 Sep 2024 21:27:25 +0000
Signed by: [email protected]" target="_blank">Étienne Mollier <[email protected]>

-----BEGIN PGP SIGNED MESSAGE-----
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Format: 1.8
Date: Mon, 16 Sep 2024 22:34:06 +0200
Source: python-biopython
Architecture: source
Version: 1.84+dfsg-1~0exp1
Distribution: experimental
Urgency: medium
Maintainer: Debian Med Packaging Team <[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Changes:
 python-biopython (1.84+dfsg-1~0exp1) experimental; urgency=medium
 .
   * New upstream version 1.84+dfsg
   * d/watch: fix debian version mangling.
   * d/copyright: update copyright years.
   * fix-use-of-unversioned-python.patch: delete: hunk removed upstream.
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   * croak-on-muscle5.patch: refresh.
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   * d/t/run-unit-test: Tutorial.tex does not exist anymore.
   * d/t/run-unit-test: new PDB tests require compressed bcif files.
   * d/rules: replace distclean target by clean in Doc/.
   * d/control: documentation now depends on Sphinx and side modules.
   * d/rules: explicitly make html documentation.
   * d/copyright: do not advertise LGPL since it is not in use.
   * d/rules: cleanup documentation from embeding and privacy breaches.
   * d/control: documentation depends on libjs-sphinx and libjs-jquery.
   * d/python-biopython-doc.docs: install sphinx html artifacts.
   * d/python-biopython-doc.doc-base: update location of the Tutorial.
   * d/python-biopython-doc.examples: new: install examples.
   * d/python-biopython-doc.lintian-overrides: flag another empty test file.
   * fix-type-cast-i386.patch: new: fix PDB test failure on 32-bit.
   * d/TODO: build reproducibility needs fixing.
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Accepted python-biopython 1.83+dfsg1-5 (source) into unstable

Sat, 14 Sep 2024 12:35:42 +0000

From: [email protected]" target="_blank">Debian FTP Masters <[email protected]>
To: [email protected]" target="_blank"> <[email protected]>
Subject: Accepted python-biopython 1.83+dfsg1-5 (source) into unstable
Date: Sat, 14 Sep 2024 12:35:37 +0000
Signed by: [email protected]" target="_blank">Michael R. Crusoe <[email protected]>

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Format: 1.8
Date: Sat, 14 Sep 2024 13:51:11 +0200
Source: python-biopython
Architecture: source
Version: 1.83+dfsg1-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <[email protected]>
Changed-By: Michael R. Crusoe <[email protected]>
Closes: 1081665
Changes:
 python-biopython (1.83+dfsg1-5) unstable; urgency=medium
 .
   * Team upload.
   * Cherry-pick patch from upstream to fix FTBFS with Python 3.13.
     Closes: #1081665
   * Remove constraints unnecessary since bullseye (oldstable):
     + python3-biopython: Drop versioned constraint on ncbi-blast+ (>= 2.10.1-3)
       in Recommends.
   * d/control: adjust build-deps to be more cross-build friendly.
   * Fix some of the DEP-3 patch metadata
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python-biopython 1.83+dfsg1-4 MIGRATED to testing

Sun, 08 Sep 2024 05:16:22 +0000

From: [email protected]" target="_blank">Debian testing watch <[email protected]>
Subject: python-biopython 1.83+dfsg1-4 MIGRATED to testing
To: [email protected]" target="_blank"> <[email protected]>
Date: Sun, 08 Sep 2024 04:39:12 +0000

FYI: The status of the python-biopython source package
in Debian's testing distribution has changed.

  Previous version: 1.83+dfsg1-3
  Current version:  1.83+dfsg1-4

-- 
This email is automatically generated once a day.  As the installation of
new packages into testing happens multiple times a day you will receive
later changes on the next day.
See https://release.debian.org/testing-watch/ for more information.

Accepted python-biopython 1.83+dfsg1-4 (source) into unstable

Fri, 06 Sep 2024 08:27:13 +0000

From: [email protected]" target="_blank">Debian FTP Masters <[email protected]>
To: [email protected]" target="_blank"> <[email protected]>
Subject: Accepted python-biopython 1.83+dfsg1-4 (source) into unstable
Date: Fri, 06 Sep 2024 06:39:38 +0000
Signed by: [email protected]" target="_blank">Étienne Mollier <[email protected]>

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Version: 1.83+dfsg1-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Closes: 1079439
Changes:
 python-biopython (1.83+dfsg1-4) unstable; urgency=medium
 .
   * skip-scipy-in-codonalign.patch: new: skip scipy tests on riscv64.
     This patch is introduced to give some breath to Risc-V CI runners while
     the core of the problem is investigated. (Closes: #1079439)
   * d/rules: skip ncbi tools tests due to #1079439.
   * d/rules: update list of excluded tests due to missing packages.
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