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Commits on Dec 8, 2017

• Fixes for translate functions, similar to #715

  josemduarte

  committed
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• Fixing also Calc.transform(Structure,Matrix4d)

  josemduarte

  committed
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Commits on Dec 7, 2017

• Fix and unit test for #715

  josemduarte

  committed
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Commits on Oct 26, 2017

• Minor bugfix and some new tests for it

  josemduarte

  committed
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Commits on Sep 8, 2017

• Making it clear that the soft memory cache is a singleton

  josemduarte

  committed
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• Fix for new tests so that they don't pollute other tests

  josemduarte

  committed
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• Solving #704 and adding some tests for #703

  josemduarte

  committed
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Commits on Aug 5, 2017

• Merge remote-tracking branch 'upstream/master'

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  luke czapla

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Commits on Aug 3, 2017

• Merge branch 'master' of github.com:biojava/biojava into serialize

  lafita

  committed
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Commits on Aug 2, 2017

• Fixing test after PDB v5 remediation

  josemduarte

  committed
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Commits on Jul 31, 2017

• Full sentence revision of all JavaDoc and addition of separate error checking method

  

  luke czapla

  authored and

  luke czapla

  committed
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Commits on Jul 28, 2017

• Add a more complete check to structure serialization test

  lafita

  committed
  5feb565

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• Make the secondary structure objects serializable

  lafita

  committed
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Commits on Jul 26, 2017

• Style changes

  

  luke czapla

  authored and

  luke czapla

  committed
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• removed SNAPSHOT from since annotation

  

  luke czapla

  authored and

  luke czapla

  committed
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• final tests using getLength() and others

  

  luke czapla

  authored and

  luke czapla

  committed
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• Proposed revision

  

  luke czapla

  authored and

  luke czapla

  committed
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Commits on Jul 25, 2017

• Added author line and other suggestions

  

  luke czapla

  authored and

  luke czapla

  committed
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• Added new getters and refined tests

  

  luke czapla

  committed
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• Added new getters and refined tests

  

  luke czapla

  committed
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Commits on Jul 24, 2017

• All classes moved to have an analyze() method and toString() for printing

  

  luke czapla

  committed
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Commits on Jul 23, 2017

• Updated tests

  

  luke czapla

  committed
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Commits on Jul 22, 2017

• finding base pairs between the same strand for hairpins

  

  luke czapla

  committed
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Commits on Jul 21, 2017

• Test fix

  

  luke czapla

  committed
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• Moved base pair code into new package basepairs

  

  luke czapla

  committed
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• Made test use no println, and class use Logger

  

  luke czapla

  committed
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• Base pair and base-pair step parameters

  

  luke czapla

  committed
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Commits on Jul 13, 2017

• Fixing tests after PDB v5 remediation

  josemduarte

  committed
  d0d8d86

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• Fixing test after case change in RCSB rest service

  josemduarte

  committed
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Commits on Jul 6, 2017

• Uncomment release Date lines and test

  lafita

  committed
  7f1a416

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• Merge branch 'master' into master

  lafita

  authored
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• Merge pull request #680 from lafita/mmcif5

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  lafita

  authored
  dbdc477

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• Implemented reading of mmCIF 5.0 changes in the _pdbx_database_status

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  pwrose

  committed
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Commits on Jun 30, 2017

• Step towards supporting MMCIF version 5

  lafita

  committed
  28a8ff3

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• Test parsing the release date from MMCIF

  lafita

  committed
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