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Integrate changes from master into develop-pypes branch#302

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rlizzo merged 39 commits into
vmtk:develop-pypesfrom
rlizzo:develop-pypes-integrate-changes
May 28, 2018
Merged

Integrate changes from master into develop-pypes branch#302
rlizzo merged 39 commits into
vmtk:develop-pypesfrom
rlizzo:develop-pypes-integrate-changes

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@rlizzo rlizzo commented May 28, 2018

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rlizzo and others added 30 commits May 8, 2018 05:54
…sing the w key. removed MR DTI preset due to errors it generated
…SE file, updated library files to reflect change in name and location
…liography, get a better figure for pypepad, fixed figure position on page, updated author affiliation, and include myself (Richard Izzo) and Simone Manini as copyright holders in the LICENSE file as per joss reviewer comments
joss - added missing doc strings for vmtkscripts
This is requested by the JOSS reviewers for paper acceptance
…umentation generation instructions to the contributor guidelines
fixed comment style for doxygen generation
rlizzo and others added 9 commits May 25, 2018 00:59
Update some of the finite element solver assembler documentation, some
segmentation documentation, and fixup a few typos. At this point most of
the C++ class reference (that we want people playing with) should have
sufficient explainations attached to them.
…webpage extensions from html to xhtml on everyone didn't seem like a great idea
[WIP] JOSS - Improve Documentation for vtkvmtk C++ classes
joss review: completed doxygen documentation as per request
Added JOSS Paper status badge to readme
@rlizzo rlizzo merged commit 6c1a5f2 into vmtk:develop-pypes May 28, 2018
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