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billhowe edited this page Jan 13, 2015 · 15 revisions

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Welcome to the sqlshare wiki!

Basics

[Standard Queries] (https://github.com/uwescience/sqlshare/wiki/Standard-Queries)
[File Format Conversions] (https://github.com/uwescience/sqlshare/wiki/File-Format-Conversions)

Tutorials

[SQLShare GeoMICS tutorial] (http://uwescience.github.io/sqlshare/)

SQL Workflows and Examples

[Workflow: Analysis of BSMAP data] (https://github.com/uwescience/sqlshare/wiki/Workflow:-Analysis-of-BSMAP-data)
[Workflow: Transfer Coordinates from Genome to Transcriptome] (https://github.com/uwescience/sqlshare/wiki/Workflow:-Transfer-Coordinates-from-Genome-to-Transcriptome)
[Workflow: Calculating gene specific methylation] (https://github.com/uwescience/sqlshare/wiki/Workflow:-Calculating-gene-specific-methylation)
[Genomics Example: Counting Reads for each Region] (https://github.com/uwescience/sqlshare/wiki/Read-Counting-Experiment)
Interolog Queries in SQL
Optimizing Matrix Multiply