Skip to content
Navigation Menu
Sign in
Appearance settings
Platform
AI CODE CREATION
GitHub Copilot
Write better code with AI
GitHub Copilot app
Direct agents from issue to merge
MCP Registry
Integrate external tools
DEVELOPER WORKFLOWS
Actions
Automate any workflow
Codespaces
Instant dev environments
Issues
Plan and track work
Code Review
Manage code changes
Code Quality
Enforce quality at merge
APPLICATION SECURITY
GitHub Advanced Security
Find and fix vulnerabilities
Code security
Secure your code as you build
Secret protection
Stop leaks before they start
EXPLORE
Why GitHub
Documentation
Blog
Changelog
Marketplace
View all features
Solutions
BY COMPANY SIZE
Enterprises
Small and medium teams
Startups
Nonprofits
BY USE CASE
App Modernization
DevSecOps
DevOps
CI/CD
View all use cases
BY INDUSTRY
Healthcare
Financial services
Manufacturing
Government
View all industries
View all solutions
Resources
EXPLORE BY TOPIC
AI
Software Development
DevOps
Security
View all topics
EXPLORE BY TYPE
Customer stories
Events & webinars
Ebooks & reports
Business insights
GitHub Skills
SUPPORT & SERVICES
Documentation
Customer support
Community forum
Trust center
Partners
View all resources
Open Source
COMMUNITY
GitHub Sponsors
Fund open source developers
PROGRAMS
Security Lab
Maintainer Community
Accelerator
GitHub Stars
Archive Program
REPOSITORIES
Topics
Trending
Collections
Enterprise
ENTERPRISE SOLUTIONS
Enterprise platform
AI-powered developer platform
AVAILABLE ADD-ONS
GitHub Advanced Security
Enterprise-grade security features
Copilot for Business
Enterprise-grade AI features
Premium Support
Enterprise-grade 24/7 support
Pricing
Search
/
Sign in
Sign up
Appearance settings
You signed in with another tab or window.
Reload
to refresh your session.
You signed out in another tab or window.
Reload
to refresh your session.
You switched accounts on another tab or window.
Reload
to refresh your session.
Dismiss alert
{{ message }}
Uh oh!
There was an error while loading.
Please reload this page
.
tskit-dev
/
tskit
Public
Notifications
You must be signed in to change notification settings
Fork
84
Star
190
Code
Issues
86
Pull requests
12
Discussions
Actions
Projects
Security and quality
0
Insights
Additional navigation options
Code
Issues
Pull requests
Discussions
Actions
Projects
Security and quality
Insights
Commits
Breadcrumbs
History for
tskit
python
on
main
User selector
All users
Datepicker
All time
Commit history
Commits on Aug 17, 2026
Update Python CHANGELOG for kastore version update
Show description for dcef7ca
jeromekelleher
committed
dcef7ca
View commit details
Copy full SHA for dcef7ca
View code at this point
Browse repository at this point
Update to kastore version 2.1.3
jeromekelleher
committed
2bbc39c
View commit details
Copy full SHA for 2bbc39c
View code at this point
Browse repository at this point
Commits on Aug 14, 2026
Periodic uv sync -U package update
jeromekelleher
committed
761fb8d
View commit details
Copy full SHA for 761fb8d
View code at this point
Browse repository at this point
metadata access counter; closes #3472
Show description for 083388d
petrelharp
authored and
jeromekelleher
committed
083388d
View commit details
Copy full SHA for 083388d
View code at this point
Browse repository at this point
Commits on Jul 6, 2026
Make sure that variant.count() returns alleles in an order
Show description for 12b196a
hyanwong
authored and
jeromekelleher
committed
12b196a
View commit details
Copy full SHA for 12b196a
View code at this point
Browse repository at this point
Commits on Jun 30, 2026
Add zizmor and harden GitHub Actions workflows
jeromekelleher
committed
37178ee
View commit details
Copy full SHA for 37178ee
View code at this point
Browse repository at this point
Commits on Jun 25, 2026
Force UTF-8 in CLI subprocess tests for Windows
Show description for 3cdd0a5
jeromekelleher
committed
3cdd0a5
View commit details
Copy full SHA for 3cdd0a5
View code at this point
Browse repository at this point
Simplify CLI stdin implementation
Show description for b60e819
jeromekelleher
committed
b60e819
View commit details
Copy full SHA for b60e819
View code at this point
Browse repository at this point
Add stdin support to the tskit CLI
Show description for 26c346d
chris-a-talbot
authored and
jeromekelleher
committed
26c346d
View commit details
Copy full SHA for 26c346d
View code at this point
Browse repository at this point
Commits on Jun 9, 2026
Correct ref typo in write_vcf docs
hyanwong
authored and
jeromekelleher
committed
a161280
View commit details
Copy full SHA for a161280
View code at this point
Browse repository at this point
Commits on May 14, 2026
start of next version
petrelharp
committed
1c689c0
View commit details
Copy full SHA for 1c689c0
View code at this point
Browse repository at this point
fix to changelog
petrelharp
committed
b62f75f
View commit details
Copy full SHA for b62f75f
View code at this point
Browse repository at this point
version bump
petrelharp
committed
a0e3198
View commit details
Copy full SHA for a0e3198
View code at this point
Browse repository at this point
Commits on May 6, 2026
In svg_draw, move the y axis when there's a title
Show description for 40698f5
hyanwong
committed
40698f5
View commit details
Copy full SHA for 40698f5
View code at this point
Browse repository at this point
Commits on May 2, 2026
Add tables.load docstring
Show description for 9be15c4
hyanwong
committed
9be15c4
View commit details
Copy full SHA for 9be15c4
View code at this point
Browse repository at this point
Commits on Apr 14, 2026
padding bytes in json+struct codec
petrelharp
committed
a34802f
View commit details
Copy full SHA for a34802f
View code at this point
Browse repository at this point
Commits on Apr 11, 2026
Support `node_labels` in `write_nexus` via `TRANSLATE`
Show description for 92d15c6
kaathewisegit
and
jeromekelleher
committed
92d15c6
View commit details
Copy full SHA for 92d15c6
View code at this point
Browse repository at this point
Commits on Mar 27, 2026
Add documentation for ts.ld_matrix()
apragsdale
authored and
petrelharp
committed
2f26dc6
View commit details
Copy full SHA for 2f26dc6
View code at this point
Browse repository at this point
Commits on Mar 9, 2026
Various review updates
Show description for 1835ea3
jeromekelleher
committed
1835ea3
View commit details
Copy full SHA for 1835ea3
View code at this point
Browse repository at this point
Add struct codec to the binary side
benjeffery
authored and
jeromekelleher
committed
89b06c4
View commit details
Copy full SHA for 89b06c4
View code at this point
Browse repository at this point
Add json+binary codec
benjeffery
authored and
jeromekelleher
committed
8794c41
View commit details
Copy full SHA for 8794c41
View code at this point
Browse repository at this point
Commits on Mar 6, 2026
Post-release for Python 1.0.2
jeromekelleher
committed
0b606fa
View commit details
Copy full SHA for 0b606fa
View code at this point
Browse repository at this point
Update Python changelog and version for 1.0.2
jeromekelleher
committed
62f24f4
View commit details
Copy full SHA for 62f24f4
View code at this point
Browse repository at this point
Udpate C lib version numbers in tests
jeromekelleher
committed
143cd78
View commit details
Copy full SHA for 143cd78
View code at this point
Browse repository at this point
Commits on Mar 5, 2026
Fixup tests on changed error messages
jeromekelleher
committed
38a5ac9
View commit details
Copy full SHA for 38a5ac9
View code at this point
Browse repository at this point
Refresh packages to use new msprime etc
jeromekelleher
committed
d261d4a
View commit details
Copy full SHA for d261d4a
View code at this point
Browse repository at this point
Commits on Mar 3, 2026
Port the lwt tests to uv and GitHub
jeromekelleher
committed
897095c
View commit details
Copy full SHA for 897095c
View code at this point
Browse repository at this point
Update low-level tests and Makefile for uv
jeromekelleher
committed
82a3de2
View commit details
Copy full SHA for 82a3de2
View code at this point
Browse repository at this point
Commits on Feb 27, 2026
Add packaging group; fix dev group; fix python-packaging workflow call
Show description for 67a7c5d
jeromekelleher
committed
67a7c5d
View commit details
Copy full SHA for 67a7c5d
View code at this point
Browse repository at this point
Commits on Feb 26, 2026
Switch to general build workflow
jeromekelleher
committed
fa4555d
View commit details
Copy full SHA for fa4555d
View code at this point
Browse repository at this point
Pin to msprime 1.4.1b1 to test wheels
jeromekelleher
committed
41f730b
View commit details
Copy full SHA for 41f730b
View code at this point
Browse repository at this point
Commits on Feb 23, 2026
Update _tskitmodule.c for recent clang-format
jeromekelleher
committed
1641b60
View commit details
Copy full SHA for 1641b60
View code at this point
Browse repository at this point
Move prek.toml to root
jeromekelleher
committed
6246911
View commit details
Copy full SHA for 6246911
View code at this point
Browse repository at this point
Remove pre-commit conf + other tidying up
Show description for ad4176f
jeromekelleher
committed
ad4176f
View commit details
Copy full SHA for ad4176f
View code at this point
Browse repository at this point
Commits on Feb 22, 2026
Initial prek+ruff setup
jeromekelleher
committed
e77b7be
View commit details
Copy full SHA for e77b7be
View code at this point
Browse repository at this point
Previous
Next
You can’t perform that action at this time.