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Copy pathTutorial_Labeled.cpp
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33 lines (26 loc) · 1.19 KB
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// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
#include <OpenMS/CONCEPT/Types.h>
#include <OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmLabeled.h>
#include <OpenMS/FORMAT/FileHandler.h>
#include <OpenMS/openms_data_path.h> // exotic header for path to tutorial data
using namespace OpenMS;
using namespace std;
int main(int argc, const char** argv)
{
vector<FeatureMap> maps(1, FeatureMap{});
FileHandler().loadFeatures(OPENMS_DOC_PATH + String("/code_examples/data/Tutorial_Labeled.featureXML"), maps[0], {FileTypes::FEATUREXML});
ConsensusMap out;
out.getColumnHeaders()[0].filename = "data/Tutorial_Labeled.mzML";
out.getColumnHeaders()[0].size = maps[0].size();
out.getColumnHeaders()[0].label = "light";
out.getColumnHeaders()[1].filename = "data/Tutorial_Labeled.mzML";
out.getColumnHeaders()[1].size = maps[0].size();
out.getColumnHeaders()[1].label = "heavy";
FeatureGroupingAlgorithmLabeled algorithm;
// ... set parameters
algorithm.group(maps, out);
FileHandler().storeConsensusFeatures("Tutorial_Labeled.consensusXML", out, {FileTypes::CONSENSUSXML});
return 0;
} //end of main