Biomedical Informatics at ETH Zurich
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- RawHash Public Forked from CMU-SAFARI/RawHash
RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genomes) in real-time without basecalling. Described by Firtina et al. (published at https://academic.oup.com/bioinformatics/article/39/Supplement_1/i297/7210440).
ratschlab/RawHash’s past year of commit activity - MinknoApiSimulator Public
ratschlab/MinknoApiSimulator’s past year of commit activity - seq2squiggle Public Forked from ZKI-PH-ImageAnalysis/seq2squiggle
End-to-end simulation of nanopore sequencing signals with feed-forward transformers
ratschlab/seq2squiggle’s past year of commit activity - aestetik Public
AESTETIK: Convolutional autoencoder for learning spot representations from spatial transcriptomics and morphology data
ratschlab/aestetik’s past year of commit activity - DeepSpot Public
DeepSpot: Deep learning model for predicting spatial transcriptomics from H&E histopathology images. Supports spot-level (Visium) and single-cell (Xenium) resolution.
ratschlab/DeepSpot’s past year of commit activity - he2st Public
Code of the paper "DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images"
ratschlab/he2st’s past year of commit activity - stmdit Public
ratschlab/stmdit’s past year of commit activity
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