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Simulation tidying (and new functionality) - #1703

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David-Baddeley merged 14 commits into
python-microscopy:masterfrom
David-Baddeley:simulation_tidying
Sep 3, 2026
Merged

Simulation tidying (and new functionality)#1703
David-Baddeley merged 14 commits into
python-microscopy:masterfrom
David-Baddeley:simulation_tidying

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@David-Baddeley

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A bunch of tidying up of simulation code, with the slightly longer term plan on making it easier to simulate without running through PYMEAcquire.

Also has a few deprecation fixes, and some incomplete packaging fixes (we can now build a standalone windows installer which doesn't require doing a pip fetch at the far end, albeit a rather bloated one (somehow we get 2 copies of PYME, python, and all the modules installed)

Some new functionality (mostly a novelty) in that I've added confocal and STED PSFs to the simulator (really only sensible if you just use the 405 laser)

Sted mode ...
image

vs widefield
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@David-Baddeley

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Going to merge early as I really want some of the bugfixes in a new install .. (and this shouldn't break anything, fingers crossed)

@David-Baddeley
David-Baddeley merged commit 29f937d into python-microscopy:master Sep 3, 2026
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