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python-microscopy
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python-microscopy
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python-microscopy
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Commits on Sep 3, 2026
Merge pull request #1703 from David-Baddeley/simulation_tidying
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fix regression due to numpy deprecation.
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Commits on Aug 20, 2026
Merge pull request #1696 from David-Baddeley/instal_fixes
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Commits on Aug 13, 2026
Merge pull request #1691 from barentine/ome_stage_pos
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Commits on Aug 6, 2026
use more reasonable metadata keys for positioning
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Commits on Aug 4, 2026
use the series number in image.py loading of bioformats datasources (bffile or otherwise)
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make OMEXMLMDHandler series aware
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add bffile ome_metadata access as a property, pointing to the selected series number
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use public numpy api to create record rather than importing core
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refactor to use OME_UNITS_TO_UM dict
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add Positioning.Stage_X, _Y, and PIFOC for OME extraction.
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Commits on Jul 31, 2026
first efforts on implementing zarr compatibility for PYME tile pyramids
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Merge pull request #1686 from csoeller/obf-and-query-handling-fixes
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Commits on Jul 24, 2026
remove deprecated signal argument
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Commits on Jul 16, 2026
a collection of OBF and container format GUI fixes
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Commits on Jul 10, 2026
fix regression where dataframe isn't actually returned for deprecated call
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Commits on Jun 24, 2026
Merge pull request #1654 from barentine/20260318
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Merge pull request #1662 from barentine/bffile
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Merge pull request #1667 from barentine/removedwarning
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Commits on Jun 19, 2026
make sure remfitbuf can pass taskQueue without messing up series number
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Commits on May 7, 2026
remove now-removed numpy warning
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Commits on May 1, 2026
make obf series display more informative
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Merge remote-tracking branch 'origin/master' into obf-series-dialog
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Commits on Apr 28, 2026
get channel names from OME XML
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use 5D as base for BFFDataSource
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move flatfielddatasource to a XYZTCDataSource inheritence
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Commits on Apr 24, 2026
add color-cropping to CropDataSource
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some fixes for 2D data for OBF files
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Commits on Apr 15, 2026
add shape info when selecting dataset from obf series
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Commits on Mar 18, 2026
flatfield datasource 5D corrections so we don't lose parent source information
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Commits on Mar 11, 2026
add a bff datasource and bioformats load path in image.py
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Commits on Mar 6, 2026
Merge pull request #1639 from barentine/numpy2_202603
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Commits on Mar 5, 2026
Merge pull request #1642 from David-Baddeley/pr1634_replacement
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Merge pull request #1604 from zacsimile/smap-flav
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Commits on Mar 3, 2026
apply 0 dim to scalar fix from BufferedDataSource to BGSDataSource as well
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