PYMEVisualize is a tool for the interactive exploration and analysis of three-dimensional (3D), multicolor, single-molecule localization data. It includes broad range of the most commonly used postprocessing, density mapping and direct quantification tools.

A detailed list of features and how to use them can be found below.

.. toctree::
   :maxdepth: 1

   Data exploration <pymevis/data_exploration>
   Data correction and quality control <pymevis/data_correction>
   Image reconstruction <pymevis/image_reconstruction>
   Surface extraction <pymevis/surface_extraction>
   Quantification <pymevis/quantification.rst>
   Segmentation and clustering <pymevis/segmentation.rst>
   Animation <pymevis/animation.rst>
   Synthetic data <pymevis/synthetic_data.rst>
   Editing the pipeline recipe <pymevis/edit_recipe.rst>
   Programmatic usage <pymevis/programmatic_usage.rst>
   Appendix <pymevis/appendix.rst>