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Copy pathlogparser.py
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executable file
·100 lines (80 loc) · 3.02 KB
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#!/usr/bin/python
##################
# logparser.py
#
# Copyright David Baddeley, 2009
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
#
##################
class logparser:
def __init__(self):
pass
def parse(self, s):
s = s.split('\n')
dic = {};
curdic = dic;
for entry in s:
if entry == '':
pass
elif entry[0] == '[':
newdic = {}
curdic = newdic
dic[entry.strip()[1:-1]] = newdic
elif entry[0] == '#':
pass
else:
e = entry.split('=')
val = ''
#Try to interpret the value as an int, then as a float.
#If that doesn't work then store as string
try:
val = int(e[1].strip())
except ValueError:
try:
val = float(e[1].strip())
except ValueError:
val = e[1].strip()
curdic[e[0]] = val
return dic
class confocal_parser(logparser):
def __init__(self, log_s):
self.dic = self.parse(log_s)
self.Width = self.dic['GLOBAL']['ImageWidth']
self.Height = self.dic['GLOBAL']['ImageLength']
self.Depth = self.dic['GLOBAL']['NumOfFrames']
self.NumChannels = self.dic['FILTERSETTING1']['NumOfVisualisations']
self.VoxelSize = (self.dic['GLOBAL']['VoxelSizeX'],self.dic['GLOBAL']['VoxelSizeY'],self.dic['GLOBAL']['VoxelSizeZ'])
self.VoxelX = self.VoxelSize[0]
self.VoxelY = self.VoxelSize[1]
self.VoxelZ = self.VoxelSize[2]
self.Averaging = self.dic['GLOBAL']['Accu']
class logwriter:
def __init__(self):
pass
def write(self, log):
#s = s.split('\n')
#dic = {};
#curdic = dic;
s = ''
cats = log.keys()
cats.sort()
for category in cats:
s = s + '[%s]\n' % category
entries = log[category].keys()
entries.sort()
for entry in entries:
s = s + '%s=%s\n' % (entry, log[category][entry])
return s