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67 lines (67 loc) · 1.21 KB
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./DownsampleSam
./IntervalListTools
./esat
./IlluminaBasecallsToSam
./CheckIlluminaDirectory
./BamToBfq
./ReorderSam
./picard-1.141
./CreateSequenceDictionary
./SortSam
./htsjdk-2.3.0
./SamFormatConverter
./muTect-1.1.4
./MarkDuplicates
./IlluminaBasecallsToFastq
./EstimateLibraryComplexity
./sam-1.102
./NormalizeFasta
./QualityScoreDistribution
./ExtractIlluminaBarcodes
./picard-1.102
./CollectAlignmentSummaryMetrics
./SamToFastq
./MakeSitesOnlyVcf
./muTect
./BuildBamIndex
./seqMINER
./ReplaceSamHeader
./VcfFormatConverter
./ViewSam
./MeanQualityByCycle
./FastqToSam
./sratoolkit
./igvtools-NOTUSE
./FilterSamReads
./RevertSam
./igvtools_gui
./ValidateSamFile
./commons-logging-1.1.1
./CalculateHsMetrics
./MergeBamAlignment
./GenomeAnalysisTK
./AddOrReplaceReadGroups
./muTect-1.1.5
./CompareSAMs
./snappy-java-1.0.3-rc3
./CollectTargetedPcrMetrics
./tribble-1.102
./variant-1.102
./CollectInsertSizeMetrics
./MergeSamFiles
./CollectRnaSeqMetrics
./GenomeAnalysisTK-3.5
./GenomeAnalysisTK-3.4-46
./CollectMultipleMetrics
./CleanSam
./apache-ant-1.8.2-bzip2
./esat-annotate
./SplitVcfs
./BamIndexStats
./igv
./CollectGcBiasMetrics
./commons-jexl-2.1.1
./MergeVcfs
./FixMateInformation
./ExtractSequences
./MarkIlluminaAdapters