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Commits on Aug 14, 2015

• Merging from master to biojava-ffx integration branch.

  jacob-litman

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Commits on Aug 4, 2015

• Updated POMs in preparation for hosting as separate Maven repository; a few comments and log messages also got slightly refactored. Everything seems ready for public Biojava-FFX integration (with t…

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  Jacob Litman

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• Fix StructureToolsTest to pass according to changes

  lafita

  committed
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Commits on Aug 3, 2015

• Crate Test for consistency in getting representative Atoms

  lafita

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Commits on Jul 29, 2015

• Extended the interface-implementation paradigm to Bonds and SSBonds. Renamed chain.getParent() and chain.setParent() to chain.getStructure() and chain.setStructure() to deconflict with other APIs. …

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  Jacob Litman

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Commits on Jul 27, 2015

• Reverting parser change: removing pure non-poly chains is a bad idea.

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  josemduarte

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Commits on Jun 25, 2015

• [maven-release-plugin] prepare for next development iteration

  andreasprlic

  committed
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• [maven-release-plugin] prepare release biojava-4.1.0

  andreasprlic

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Commits on Apr 28, 2015

• Run development/addlicense.sh

  sbliven

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Commits on Apr 15, 2015

• Adding long-running ECOD test. Must be run manually.

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  sbliven

  committed
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• Allow single-residue ranges

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  sbliven

  committed
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Commits on Apr 2, 2015

• Fixing issue introduced in 543d730: mmcif parser was not doing

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  josemduarte

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Commits on Mar 27, 2015

• Removing additional newly deprecated methods

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  sbliven

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Commits on Mar 26, 2015

• Reducing assumptions that structures are protein

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  sbliven

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Commits on Mar 17, 2015

• Improving memory efficiency of EcodFactory

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  sbliven

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Commits on Mar 16, 2015

• More ECOD format changes

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  sbliven

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• First round of fixes to ECOD format

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  sbliven

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Commits on Mar 11, 2015

• Merge branch 'patch' into minor

  sbliven

  committed
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• Some #111

  josemduarte

  committed
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• ECOD Improvements

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  sbliven

  committed
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Commits on Mar 10, 2015

• ECOD improvements

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  sbliven

  committed
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• Moving EcodInstallationTest to integrationtest package

  sbliven

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Commits on Feb 2, 2015

• Prepare for next minor version

  sbliven

  committed
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Commits on Jan 30, 2015

• [maven-release-plugin] prepare for next development iteration

  andreasprlic

  committed
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• [maven-release-plugin] prepare release biojava-4.0.0

  andreasprlic

  committed
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• Refactoring of all package names according to #245 #242 #240

  andreasprlic

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Commits on Jan 29, 2015

• updating to new module names

  andreasprlic

  committed
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• Ran Optimize Imports across the whole project.

  andreasprlic

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• Major refactoring of package names in accordance with #245 #242 #240

  andreasprlic

  committed
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