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1. Commits on Jan 27, 2015

   • add to retain bin directory

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2. Commits on Jan 26, 2015

   • update

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   • update

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   • bugfix to recently introduced bug - count models and transcripts separately now

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   • update to new format

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   • update

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   • add

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3. Commits on Jan 25, 2015

   • rm

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   • count every sequence during progress monitoring

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   • another logging update

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   • progress logging

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   • update to documentation

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   • add, initial code revision... still requires fine-tuning to make it work now

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   • Initial commit

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