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Commits on Apr 8, 2018

• fix template residue index in SPX

  kad-ecoli

  committed
  c0489bd

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• fix sequence bug in WWW

  kad-ecoli

  committed
  534c188

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• fix bug when > is in middle of name

  kad-ecoli

  committed
  0c549c6

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• add more maxSAS parameters

  kad-ecoli

  committed
  6052f6a

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Commits on Jan 12, 2018

• make doc of PredNc kess confusing

  kad-ecoli

  committed
  c482da9

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Commits on Jan 10, 2018

• add upper and lower bound for PredNc.py

  kad-ecoli

  committed
  1e20fb7

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Commits on Jan 3, 2018

• by default, do not use solv for contact num pred

  kad-ecoli

  committed
  6d7b579

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Commits on Jan 2, 2018

• also print L

  kad-ecoli

  committed
  b273397

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• contact number estimation

  kad-ecoli

  committed
  a2ad01c

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• pdb2sart print solvent accessibility

  kad-ecoli

  committed
  5b2392e

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Commits on Dec 30, 2017

• -outfmt=stat by default

  kad-ecoli

  committed
  02c9a69

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Commits on Nov 23, 2017

• residue number by secondary structure type

  kad-ecoli

  committed
  aa60280

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• fix docstring

  kad-ecoli

  committed
  caf34a3

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• contact number calculation

  kad-ecoli

  committed
  54390bc

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Commits on Nov 18, 2017

• fix critical bug in alignment.fasta generation

  kad-ecoli

  committed
  58e6438

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• read from stdin

  kad-ecoli

  committed
  fca87f3

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Commits on Nov 17, 2017

• split multimodel PDB

  kad-ecoli

  committed
  2b3602e

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Commits on Sep 24, 2017

• grep-GO and grep-uniprot consider word boundary in regexp

  kad-ecoli

  committed
  7a10278

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Commits on Jun 27, 2017

• support gremlin format

  

  Chengxin Zhang

  committed
  d06c97c

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Commits on Jun 11, 2017

• contact_pdb.py accept freecontact format

  kad-ecoli

  committed
  5e08bd2

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Commits on Jun 5, 2017

• superpose.py can offset models

  

  Chengxin Zhang

  committed
  0664302

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Commits on Jun 2, 2017

• remove last empty line in multimodel pdb superposition

  

  Chengxin Zhang

  committed
  610e342

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• treat LOMETS init.dat as multimodel PDB

  

  Chengxin Zhang

  committed
  34cf28d

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Commits on May 26, 2017

• add contact map residue offset feature

  

  Chengxin Zhang

  committed
  8d6f80e

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Commits on May 25, 2017

• range without contact are assigned accuracy of 0 instead of -1

  

  Chengxin Zhang

  committed
  32de7a5

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• fix error message printing bug

  

  Chengxin Zhang

  committed
  2adf5b0

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Commits on May 20, 2017

• more realistic defination alpha/beta/alphabeta

  

  Chengxin Zhang

  committed
  5f02d2c

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Commits on May 18, 2017

• batch_retrieval.py header parsing

  kad-ecoli

  committed
  fa2e850

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Commits on May 15, 2017

• split_fasta split fasta to current folder

  kad-ecoli

  committed
  1ee51ad

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Commits on Mar 2, 2017

• remove dependence on Bio.SeqIO from seq_similarity.py

  

  Chengxin Zhang

  committed
  19a55d7

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• fix python2.6 compatibility

  

  Chengxin Zhang

  committed
  4fc4b08

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Commits on Feb 20, 2017

• sidechain.py support modeller,scwrl,pulchra

  

  Chengxin Zhang

  committed
  f6edc81

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• pdb2fasta.py honors chain ID of origin PDB file

  

  Chengxin Zhang

  committed
  5c66983

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• fix contact_pdb cannot recognize scientific number bug

  

  Chengxin Zhang

  committed
  17a0c01

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Commits on Feb 19, 2017

• start to code full atom reconstruction program

  kad-ecoli

  committed
  0a474d0

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