-
Notifications
You must be signed in to change notification settings - Fork 26
Expand file tree
/
Copy pathserialized-form.html
More file actions
686 lines (686 loc) · 25.5 KB
/
Copy pathserialized-form.html
File metadata and controls
686 lines (686 loc) · 25.5 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
<!-- NewPage -->
<html lang="en">
<head>
<!-- Generated by javadoc (version 1.7.0_67) on Mon Nov 24 10:41:23 EST 2014 -->
<title>Serialized Form</title>
<meta name="date" content="2014-11-24">
<link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
</head>
<body>
<script type="text/javascript"><!--
if (location.href.indexOf('is-external=true') == -1) {
parent.document.title="Serialized Form";
}
//-->
</script>
<noscript>
<div>JavaScript is disabled on your browser.</div>
</noscript>
<!-- ========= START OF TOP NAVBAR ======= -->
<div class="topNav"><a name="navbar_top">
<!-- -->
</a><a href="#skip-navbar_top" title="Skip navigation links"></a><a name="navbar_top_firstrow">
<!-- -->
</a>
<ul class="navList" title="Navigation">
<li><a href="overview-summary.html">Overview</a></li>
<li>Package</li>
<li>Class</li>
<li>Use</li>
<li><a href="overview-tree.html">Tree</a></li>
<li><a href="deprecated-list.html">Deprecated</a></li>
<li><a href="index-files/index-1.html">Index</a></li>
<li><a href="help-doc.html">Help</a></li>
</ul>
</div>
<div class="subNav">
<ul class="navList">
<li>Prev</li>
<li>Next</li>
</ul>
<ul class="navList">
<li><a href="index.html?serialized-form.html" target="_top">Frames</a></li>
<li><a href="serialized-form.html" target="_top">No Frames</a></li>
</ul>
<ul class="navList" id="allclasses_navbar_top">
<li><a href="allclasses-noframe.html">All Classes</a></li>
</ul>
<div>
<script type="text/javascript"><!--
allClassesLink = document.getElementById("allclasses_navbar_top");
if(window==top) {
allClassesLink.style.display = "block";
}
else {
allClassesLink.style.display = "none";
}
//-->
</script>
</div>
<a name="skip-navbar_top">
<!-- -->
</a></div>
<!-- ========= END OF TOP NAVBAR ========= -->
<div class="header">
<h1 title="Serialized Form" class="title">Serialized Form</h1>
</div>
<div class="serializedFormContainer">
<ul class="blockList">
<li class="blockList">
<h2 title="Package">Package bartMachine</h2>
<ul class="blockList">
<li class="blockList"><a name="bartMachine.bartMachine_a_base">
<!-- -->
</a>
<h3>Class <a href="bartMachine/bartMachine_a_base.html" title="class in bartMachine">bartMachine.bartMachine_a_base</a> extends <a href="bartMachine/Classifier.html" title="class in bartMachine">Classifier</a> implements Serializable</h3>
<ul class="blockList">
<li class="blockList"><a name="serializedForm">
<!-- -->
</a>
<h3>Serialized Fields</h3>
<ul class="blockList">
<li class="blockList">
<h4>gibbs_samples_of_bart_trees</h4>
<pre><a href="bartMachine/bartMachineTreeNode.html" title="class in bartMachine">bartMachineTreeNode</a>[][] gibbs_samples_of_bart_trees</pre>
<div class="block">all Gibbs samples for burn-in and post burn-in where each entry is a vector of pointers to the <code>num_trees</code> trees in the sum-of-trees model</div>
</li>
<li class="blockList">
<h4>gibbs_samples_of_bart_trees_after_burn_in</h4>
<pre><a href="bartMachine/bartMachineTreeNode.html" title="class in bartMachine">bartMachineTreeNode</a>[][] gibbs_samples_of_bart_trees_after_burn_in</pre>
<div class="block">Gibbs samples post burn-in where each entry is a vector of pointers to the <code>num_trees</code> trees in the sum-of-trees model</div>
</li>
<li class="blockList">
<h4>gibbs_samples_of_sigsq</h4>
<pre>double[] gibbs_samples_of_sigsq</pre>
<div class="block">Gibbs samples for burn-in and post burn-in of the variances</div>
</li>
<li class="blockList">
<h4>gibbs_samples_of_sigsq_after_burn_in</h4>
<pre>double[] gibbs_samples_of_sigsq_after_burn_in</pre>
<div class="block">Gibbs samples for post burn-in of the variances</div>
</li>
<li class="blockList">
<h4>accept_reject_mh</h4>
<pre>boolean[][] accept_reject_mh</pre>
<div class="block">a record of whether each Gibbs sample accepted or rejected the MH step within each of the <code>num_trees</code> trees</div>
</li>
<li class="blockList">
<h4>accept_reject_mh_steps</h4>
<pre>char[][] accept_reject_mh_steps</pre>
<div class="block">a record of the proposal of each Gibbs sample within each of the <code>m</code> trees: G, P or C for "grow", "prune", "change"</div>
</li>
<li class="blockList">
<h4>num_trees</h4>
<pre>int num_trees</pre>
<div class="block">the number of trees in our sum-of-trees model</div>
</li>
<li class="blockList">
<h4>num_gibbs_burn_in</h4>
<pre>int num_gibbs_burn_in</pre>
<div class="block">how many Gibbs samples we burn-in for</div>
</li>
<li class="blockList">
<h4>num_gibbs_total_iterations</h4>
<pre>int num_gibbs_total_iterations</pre>
<div class="block">how many total Gibbs samples in a BART model creation</div>
</li>
<li class="blockList">
<h4>threadNum</h4>
<pre>int threadNum</pre>
<div class="block">the current thread being used to run this Gibbs sampler</div>
</li>
<li class="blockList">
<h4>num_cores</h4>
<pre>int num_cores</pre>
<div class="block">how many CPU cores to use during model creation</div>
</li>
<li class="blockList">
<h4>mem_cache_for_speed</h4>
<pre>boolean mem_cache_for_speed</pre>
<div class="block">whether or not we use the memory cache feature</div>
<dl><dt><span class="strong">See Also:</span></dt><dd><code>3.1 of Kapelner, A and Bleich, J. bartMachine: A Powerful Tool for Machine Learning in R. ArXiv e-prints, 2013</code></dd></dl>
</li>
<li class="blockListLast">
<h4>verbose</h4>
<pre>boolean verbose</pre>
<div class="block">should we print stuff out to screen?</div>
</li>
</ul>
</li>
</ul>
</li>
<li class="blockList"><a name="bartMachine.bartMachine_b_hyperparams">
<!-- -->
</a>
<h3>Class <a href="bartMachine/bartMachine_b_hyperparams.html" title="class in bartMachine">bartMachine.bartMachine_b_hyperparams</a> extends <a href="bartMachine/bartMachine_a_base.html" title="class in bartMachine">bartMachine_a_base</a> implements Serializable</h3>
<ul class="blockList">
<li class="blockList"><a name="serializedForm">
<!-- -->
</a>
<h3>Serialized Fields</h3>
<ul class="blockList">
<li class="blockList">
<h4>hyper_mu_mu</h4>
<pre>double hyper_mu_mu</pre>
<div class="block">the center of the prior of the terminal node prediction distribution</div>
</li>
<li class="blockList">
<h4>hyper_sigsq_mu</h4>
<pre>double hyper_sigsq_mu</pre>
<div class="block">the variance of the prior of the terminal node prediction distribution</div>
</li>
<li class="blockList">
<h4>hyper_nu</h4>
<pre>double hyper_nu</pre>
<div class="block">half the shape parameter and half the multiplicand of the scale parameter of the inverse gamma prior on the variance</div>
</li>
<li class="blockList">
<h4>hyper_lambda</h4>
<pre>double hyper_lambda</pre>
<div class="block">the multiplier of the scale parameter of the inverse gamma prior on the variance</div>
</li>
<li class="blockList">
<h4>hyper_k</h4>
<pre>double hyper_k</pre>
<div class="block">this controls where to set <code>hyper_sigsq_mu</code> by forcing the variance to be this number of standard deviations on the normal CDF</div>
</li>
<li class="blockList">
<h4>hyper_q</h4>
<pre>double hyper_q</pre>
<div class="block">At a fixed <code>hyper_nu</code>, this controls where to set <code>hyper_lambda</code> by forcing q proportion to be at that value in the inverse gamma CDF</div>
</li>
<li class="blockList">
<h4>alpha</h4>
<pre>double alpha</pre>
<div class="block">A hyperparameter that controls how easy it is to grow new nodes in a tree independent of depth</div>
</li>
<li class="blockList">
<h4>beta</h4>
<pre>double beta</pre>
<div class="block">A hyperparameter that controls how easy it is to grow new nodes in a tree dependent on depth which makes it more difficult as the tree gets deeper</div>
</li>
<li class="blockList">
<h4>y_min</h4>
<pre>double y_min</pre>
<div class="block">the minimum of the response variable on its original scale</div>
</li>
<li class="blockList">
<h4>y_max</h4>
<pre>double y_max</pre>
<div class="block">the maximum of the response variable on its original scale</div>
</li>
<li class="blockList">
<h4>y_range_sq</h4>
<pre>double y_range_sq</pre>
<div class="block">the minimum of the response variable on its original scale</div>
</li>
<li class="blockListLast">
<h4>sample_var_y</h4>
<pre>java.lang.Double sample_var_y</pre>
<div class="block">the sample variance of the response variable on its original scale</div>
</li>
</ul>
</li>
</ul>
</li>
<li class="blockList"><a name="bartMachine.bartMachine_c_debug">
<!-- -->
</a>
<h3>Class <a href="bartMachine/bartMachine_c_debug.html" title="class in bartMachine">bartMachine.bartMachine_c_debug</a> extends <a href="bartMachine/bartMachine_b_hyperparams.html" title="class in bartMachine">bartMachine_b_hyperparams</a> implements Serializable</h3>
<ul class="blockList">
<li class="blockList"><a name="serializedForm">
<!-- -->
</a>
<h3>Serialized Fields</h3>
<ul class="blockList">
<li class="blockListLast">
<h4>tree_illust</h4>
<pre>boolean tree_illust</pre>
<div class="block">should we create illustrations of the trees and save the images to the debug directory?</div>
</li>
</ul>
</li>
</ul>
</li>
<li class="blockList"><a name="bartMachine.bartMachine_d_init">
<!-- -->
</a>
<h3>Class <a href="bartMachine/bartMachine_d_init.html" title="class in bartMachine">bartMachine.bartMachine_d_init</a> extends <a href="bartMachine/bartMachine_c_debug.html" title="class in bartMachine">bartMachine_c_debug</a> implements Serializable</h3>
<ul class="blockList">
<li class="blockList"><a name="serializedForm">
<!-- -->
</a>
<h3>Serialized Fields</h3>
<ul class="blockList">
<li class="blockListLast">
<h4>gibbs_sample_num</h4>
<pre>int gibbs_sample_num</pre>
<div class="block">the number of the current Gibbs sample</div>
</li>
</ul>
</li>
</ul>
</li>
<li class="blockList"><a name="bartMachine.bartMachine_e_gibbs_base">
<!-- -->
</a>
<h3>Class <a href="bartMachine/bartMachine_e_gibbs_base.html" title="class in bartMachine">bartMachine.bartMachine_e_gibbs_base</a> extends <a href="bartMachine/bartMachine_d_init.html" title="class in bartMachine">bartMachine_d_init</a> implements Serializable</h3>
</li>
<li class="blockList"><a name="bartMachine.bartMachine_f_gibbs_internal">
<!-- -->
</a>
<h3>Class <a href="bartMachine/bartMachine_f_gibbs_internal.html" title="class in bartMachine">bartMachine.bartMachine_f_gibbs_internal</a> extends <a href="bartMachine/bartMachine_e_gibbs_base.html" title="class in bartMachine">bartMachine_e_gibbs_base</a> implements Serializable</h3>
</li>
<li class="blockList"><a name="bartMachine.bartMachine_g_mh">
<!-- -->
</a>
<h3>Class <a href="bartMachine/bartMachine_g_mh.html" title="class in bartMachine">bartMachine.bartMachine_g_mh</a> extends <a href="bartMachine/bartMachine_f_gibbs_internal.html" title="class in bartMachine">bartMachine_f_gibbs_internal</a> implements Serializable</h3>
<ul class="blockList">
<li class="blockList"><a name="serializedForm">
<!-- -->
</a>
<h3>Serialized Fields</h3>
<ul class="blockList">
<li class="blockList">
<h4>prob_grow</h4>
<pre>double prob_grow</pre>
<div class="block">the hyperparameter of the probability of picking a grow step during the Metropolis-Hastings tree proposal</div>
</li>
<li class="blockListLast">
<h4>prob_prune</h4>
<pre>double prob_prune</pre>
<div class="block">the hyperparameter of the probability of picking a prune step during the Metropolis-Hastings tree proposal</div>
</li>
</ul>
</li>
</ul>
</li>
<li class="blockList"><a name="bartMachine.bartMachine_h_eval">
<!-- -->
</a>
<h3>Class <a href="bartMachine/bartMachine_h_eval.html" title="class in bartMachine">bartMachine.bartMachine_h_eval</a> extends <a href="bartMachine/bartMachine_g_mh.html" title="class in bartMachine">bartMachine_g_mh</a> implements Serializable</h3>
</li>
<li class="blockList"><a name="bartMachine.bartMachine_i_prior_cov_spec">
<!-- -->
</a>
<h3>Class <a href="bartMachine/bartMachine_i_prior_cov_spec.html" title="class in bartMachine">bartMachine.bartMachine_i_prior_cov_spec</a> extends <a href="bartMachine/bartMachine_h_eval.html" title="class in bartMachine">bartMachine_h_eval</a> implements Serializable</h3>
<ul class="blockList">
<li class="blockList"><a name="serializedForm">
<!-- -->
</a>
<h3>Serialized Fields</h3>
<ul class="blockList">
<li class="blockList">
<h4>use_prior_cov_spec</h4>
<pre>boolean use_prior_cov_spec</pre>
<div class="block">Do we use this feature in this BART model?</div>
</li>
<li class="blockListLast">
<h4>cov_split_prior</h4>
<pre>double[] cov_split_prior</pre>
<div class="block">This is a probability vector which is the prior on which covariates to split instead of the uniform discrete distribution by default</div>
</li>
</ul>
</li>
</ul>
</li>
<li class="blockList"><a name="bartMachine.bartMachineClassification">
<!-- -->
</a>
<h3>Class <a href="bartMachine/bartMachineClassification.html" title="class in bartMachine">bartMachine.bartMachineClassification</a> extends <a href="bartMachine/bartMachineRegression.html" title="class in bartMachine">bartMachineRegression</a> implements Serializable</h3>
</li>
<li class="blockList"><a name="bartMachine.bartMachineClassificationMultThread">
<!-- -->
</a>
<h3>Class <a href="bartMachine/bartMachineClassificationMultThread.html" title="class in bartMachine">bartMachine.bartMachineClassificationMultThread</a> extends <a href="bartMachine/bartMachineRegressionMultThread.html" title="class in bartMachine">bartMachineRegressionMultThread</a> implements Serializable</h3>
<ul class="blockList">
<li class="blockList"><a name="serializedForm">
<!-- -->
</a>
<h3>Serialized Fields</h3>
<ul class="blockList">
<li class="blockListLast">
<h4>classification_rule</h4>
<pre>double classification_rule</pre>
<div class="block">The value of the classification rule which if the probability estimate of Y = 1 is greater than, we predict 1</div>
</li>
</ul>
</li>
</ul>
</li>
<li class="blockList"><a name="bartMachine.bartMachineRegression">
<!-- -->
</a>
<h3>Class <a href="bartMachine/bartMachineRegression.html" title="class in bartMachine">bartMachine.bartMachineRegression</a> extends <a href="bartMachine/bartMachine_i_prior_cov_spec.html" title="class in bartMachine">bartMachine_i_prior_cov_spec</a> implements Serializable</h3>
</li>
<li class="blockList"><a name="bartMachine.bartMachineRegressionMultThread">
<!-- -->
</a>
<h3>Class <a href="bartMachine/bartMachineRegressionMultThread.html" title="class in bartMachine">bartMachine.bartMachineRegressionMultThread</a> extends <a href="bartMachine/Classifier.html" title="class in bartMachine">Classifier</a> implements Serializable</h3>
<ul class="blockList">
<li class="blockList"><a name="serializedForm">
<!-- -->
</a>
<h3>Serialized Fields</h3>
<ul class="blockList">
<li class="blockList">
<h4>num_cores</h4>
<pre>int num_cores</pre>
<div class="block">the number of CPU cores to build many different Gibbs chain within a BART model</div>
</li>
<li class="blockList">
<h4>num_trees</h4>
<pre>int num_trees</pre>
<div class="block">the number of trees in this BART model on all Gibbs chains</div>
</li>
<li class="blockList">
<h4>bart_gibbs_chain_threads</h4>
<pre><a href="bartMachine/bartMachineRegression.html" title="class in bartMachine">bartMachineRegression</a>[] bart_gibbs_chain_threads</pre>
<div class="block">the collection of <code>num_cores</code> BART models which will run separate Gibbs chains</div>
</li>
<li class="blockList">
<h4>gibbs_samples_of_bart_trees_after_burn_in</h4>
<pre><a href="bartMachine/bartMachineTreeNode.html" title="class in bartMachine">bartMachineTreeNode</a>[][] gibbs_samples_of_bart_trees_after_burn_in</pre>
<div class="block">this is the combined gibbs samples after burn in from all of the <code>num_cores</code> chains</div>
</li>
<li class="blockList">
<h4>sample_var_y</h4>
<pre>java.lang.Double sample_var_y</pre>
<div class="block">the estimate of some upper limit of the variance of the response which is usually the MSE from a a linear regression</div>
</li>
<li class="blockList">
<h4>num_gibbs_burn_in</h4>
<pre>int num_gibbs_burn_in</pre>
<div class="block">the number of burn-in samples in each Gibbs chain</div>
</li>
<li class="blockList">
<h4>num_gibbs_total_iterations</h4>
<pre>int num_gibbs_total_iterations</pre>
<div class="block">the total number of gibbs samples where each chain gets a number of burn-in and then the difference from the total divided by <code>num_cores</code></div>
</li>
<li class="blockList">
<h4>total_iterations_multithreaded</h4>
<pre>int total_iterations_multithreaded</pre>
<div class="block">the total number of Gibbs samples for each of the <code>num_cores</code> chains</div>
</li>
<li class="blockList">
<h4>cov_split_prior</h4>
<pre>double[] cov_split_prior</pre>
<div class="block">The probability vector that samples covariates for selecting split rules</div>
</li>
<li class="blockList">
<h4>alpha</h4>
<pre>java.lang.Double alpha</pre>
<div class="block">A hyperparameter that controls how easy it is to grow new nodes in a tree independent of depth</div>
</li>
<li class="blockList">
<h4>beta</h4>
<pre>java.lang.Double beta</pre>
<div class="block">A hyperparameter that controls how easy it is to grow new nodes in a tree dependent on depth which makes it more difficult as the tree gets deeper</div>
</li>
<li class="blockList">
<h4>hyper_k</h4>
<pre>java.lang.Double hyper_k</pre>
<div class="block">this controls where to set <code>hyper_sigsq_mu</code> by forcing the variance to be this number of standard deviations on the normal CDF</div>
</li>
<li class="blockList">
<h4>hyper_q</h4>
<pre>java.lang.Double hyper_q</pre>
<div class="block">At a fixed <code>hyper_nu</code>, this controls where to set <code>hyper_lambda</code> by forcing q proportion to be at that value in the inverse gamma CDF</div>
</li>
<li class="blockList">
<h4>hyper_nu</h4>
<pre>java.lang.Double hyper_nu</pre>
<div class="block">half the shape parameter and half the multiplicand of the scale parameter of the inverse gamma prior on the variance</div>
</li>
<li class="blockList">
<h4>prob_grow</h4>
<pre>java.lang.Double prob_grow</pre>
<div class="block">the hyperparameter of the probability of picking a grow step during the Metropolis-Hastings tree proposal</div>
</li>
<li class="blockList">
<h4>prob_prune</h4>
<pre>java.lang.Double prob_prune</pre>
<div class="block">the hyperparameter of the probability of picking a prune step during the Metropolis-Hastings tree proposal</div>
</li>
<li class="blockList">
<h4>verbose</h4>
<pre>boolean verbose</pre>
<div class="block">should we print select messages to the screen</div>
</li>
<li class="blockListLast">
<h4>mem_cache_for_speed</h4>
<pre>boolean mem_cache_for_speed</pre>
<div class="block">whether or not we use the memory cache feature</div>
<dl><dt><span class="strong">See Also:</span></dt><dd><code>3.1 of Kapelner, A and Bleich, J. bartMachine: A Powerful Tool for Machine Learning in R. ArXiv e-prints, 2013</code></dd></dl>
</li>
</ul>
</li>
</ul>
</li>
<li class="blockList"><a name="bartMachine.bartMachineTreeNode">
<!-- -->
</a>
<h3>Class <a href="bartMachine/bartMachineTreeNode.html" title="class in bartMachine">bartMachine.bartMachineTreeNode</a> extends java.lang.Object implements Serializable</h3>
<ul class="blockList">
<li class="blockList"><a name="serializedForm">
<!-- -->
</a>
<h3>Serialized Fields</h3>
<ul class="blockList">
<li class="blockList">
<h4>bart</h4>
<pre><a href="bartMachine/bartMachine_b_hyperparams.html" title="class in bartMachine">bartMachine_b_hyperparams</a> bart</pre>
<div class="block">a link back to the overall bart model</div>
</li>
<li class="blockList">
<h4>parent</h4>
<pre><a href="bartMachine/bartMachineTreeNode.html" title="class in bartMachine">bartMachineTreeNode</a> parent</pre>
<div class="block">the parent node of this node</div>
</li>
<li class="blockList">
<h4>left</h4>
<pre><a href="bartMachine/bartMachineTreeNode.html" title="class in bartMachine">bartMachineTreeNode</a> left</pre>
<div class="block">the left daughter node</div>
</li>
<li class="blockList">
<h4>right</h4>
<pre><a href="bartMachine/bartMachineTreeNode.html" title="class in bartMachine">bartMachineTreeNode</a> right</pre>
<div class="block">the right daughter node</div>
</li>
<li class="blockList">
<h4>depth</h4>
<pre>int depth</pre>
<div class="block">the generation of this node from the top node (root note has generation = 0 by definition)</div>
</li>
<li class="blockList">
<h4>isLeaf</h4>
<pre>boolean isLeaf</pre>
<div class="block">is this node a terminal node?</div>
</li>
<li class="blockList">
<h4>splitAttributeM</h4>
<pre>int splitAttributeM</pre>
<div class="block">the attribute this node makes a decision on</div>
</li>
<li class="blockList">
<h4>splitValue</h4>
<pre>double splitValue</pre>
<div class="block">the value this node makes a decision on</div>
</li>
<li class="blockList">
<h4>sendMissingDataRight</h4>
<pre>boolean sendMissingDataRight</pre>
<div class="block">send missing data to the right?</div>
</li>
<li class="blockListLast">
<h4>y_pred</h4>
<pre>double y_pred</pre>
<div class="block">if this is a leaf node, then the result of the prediction for regression, otherwise null</div>
</li>
</ul>
</li>
</ul>
</li>
<li class="blockList"><a name="bartMachine.Classifier">
<!-- -->
</a>
<h3>Class <a href="bartMachine/Classifier.html" title="class in bartMachine">bartMachine.Classifier</a> extends java.lang.Object implements Serializable</h3>
<ul class="blockList">
<li class="blockList"><a name="serializedForm">
<!-- -->
</a>
<h3>Serialized Fields</h3>
<ul class="blockList">
<li class="blockList">
<h4>n</h4>
<pre>int n</pre>
<div class="block">the number of records in the training set</div>
</li>
<li class="blockList">
<h4>p</h4>
<pre>int p</pre>
<div class="block">the number of features / predictors in the training set</div>
</li>
<li class="blockListLast">
<h4>unique_name</h4>
<pre>java.lang.String unique_name</pre>
<div class="block">the name of this classifier (useful for debugging)</div>
</li>
</ul>
</li>
</ul>
</li>
</ul>
</li>
<li class="blockList">
<h2 title="Package">Package CustomLogging</h2>
<ul class="blockList">
<li class="blockList"><a name="CustomLogging.StdOutErrLevel">
<!-- -->
</a>
<h3>Class <a href="CustomLogging/StdOutErrLevel.html" title="class in CustomLogging">CustomLogging.StdOutErrLevel</a> extends java.util.logging.Level implements Serializable</h3>
<dl class="nameValue">
<dt>serialVersionUID:</dt>
<dd>-9122466300490214950L</dd>
</dl>
<ul class="blockList">
<li class="blockList"><a name="serialized_methods">
<!-- -->
</a>
<h3>Serialization Methods</h3>
<ul class="blockList">
<li class="blockListLast"><a name="readResolve()">
<!-- -->
</a>
<h4>readResolve</h4>
<pre>protected java.lang.Object readResolve()
throws java.io.ObjectStreamException</pre>
<div class="block">\* Method to avoid creating duplicate instances when deserializing the
\* object.
\* @return the singleton instance of this <code>Level</code> value in this
\* classloader
\* @throws ObjectStreamException If unable to deserialize
\</div>
<dl><dt><span class="strong">Throws:</span></dt>
<dd><code>java.io.ObjectStreamException</code></dd></dl>
</li>
</ul>
</li>
</ul>
</li>
</ul>
</li>
<li class="blockList">
<h2 title="Package">Package OpenSourceExtensions</h2>
<ul class="blockList">
<li class="blockList"><a name="OpenSourceExtensions.TDoubleHashSetAndArray">
<!-- -->
</a>
<h3>Class <a href="OpenSourceExtensions/TDoubleHashSetAndArray.html" title="class in OpenSourceExtensions">OpenSourceExtensions.TDoubleHashSetAndArray</a> extends gnu.trove.impl.hash.TDoubleHash implements Serializable</h3>
<dl class="nameValue">
<dt>serialVersionUID:</dt>
<dd>1L</dd>
</dl>
<ul class="blockList">
<li class="blockList"><a name="serialized_methods">
<!-- -->
</a>
<h3>Serialization Methods</h3>
<ul class="blockList">
<li class="blockList"><a name="readExternal(java.io.ObjectInput)">
<!-- -->
</a>
<h4>readExternal</h4>
<pre>public void readExternal(java.io.ObjectInput in)
throws java.io.IOException,
java.lang.ClassNotFoundException</pre>
<dl><dt><span class="strong">Throws:</span></dt>
<dd><code>java.io.IOException</code></dd>
<dd><code>java.lang.ClassNotFoundException</code></dd></dl>
</li>
<li class="blockListLast"><a name="writeExternal(java.io.ObjectOutput)">
<!-- -->
</a>
<h4>writeExternal</h4>
<pre>public void writeExternal(java.io.ObjectOutput out)
throws java.io.IOException</pre>
<dl><dt><span class="strong">Throws:</span></dt>
<dd><code>java.io.IOException</code></dd></dl>
</li>
</ul>
</li>
</ul>
</li>
</ul>
</li>
</ul>
</div>
<!-- ======= START OF BOTTOM NAVBAR ====== -->
<div class="bottomNav"><a name="navbar_bottom">
<!-- -->
</a><a href="#skip-navbar_bottom" title="Skip navigation links"></a><a name="navbar_bottom_firstrow">
<!-- -->
</a>
<ul class="navList" title="Navigation">
<li><a href="overview-summary.html">Overview</a></li>
<li>Package</li>
<li>Class</li>
<li>Use</li>
<li><a href="overview-tree.html">Tree</a></li>
<li><a href="deprecated-list.html">Deprecated</a></li>
<li><a href="index-files/index-1.html">Index</a></li>
<li><a href="help-doc.html">Help</a></li>
</ul>
</div>
<div class="subNav">
<ul class="navList">
<li>Prev</li>
<li>Next</li>
</ul>
<ul class="navList">
<li><a href="index.html?serialized-form.html" target="_top">Frames</a></li>
<li><a href="serialized-form.html" target="_top">No Frames</a></li>
</ul>
<ul class="navList" id="allclasses_navbar_bottom">
<li><a href="allclasses-noframe.html">All Classes</a></li>
</ul>
<div>
<script type="text/javascript"><!--
allClassesLink = document.getElementById("allclasses_navbar_bottom");
if(window==top) {
allClassesLink.style.display = "block";
}
else {
allClassesLink.style.display = "none";
}
//-->
</script>
</div>
<a name="skip-navbar_bottom">
<!-- -->
</a></div>
<!-- ======== END OF BOTTOM NAVBAR ======= -->
</body>
</html>