Skip to content
@eitm-org

Ellison Institute, LLC

Popular repositories Loading

  1. organoizer organoizer Public

    Shiny-based web app for analysis of patient-derived tumor organoid drug response (from Spiller et al. 2021)

    R 2

  2. organoid_drug_response organoid_drug_response Public

    Analysis and figures for Spiller at al. 2021

    R 1

  3. protein_design_eval protein_design_eval Public

    Forked from aqlaboratory/insilico_design_pipeline

    In-silico design pipeline for evaluating protein structure diffusion models.

    C++ 1

  4. sarek_pipeline sarek_pipeline Public

    Forked from eitm-org/sarek

    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

    Nextflow 1

  5. micro-manager micro-manager Public

    Forked from micro-manager/micro-manager

    Microscope control and image acquisition integrated with ImageJ

    Java 1

  6. digital_slide_archive digital_slide_archive Public

    Forked from cammlab/digital_slide_archive

    The official deployment of the Digital Slide Archive and HistomicsTK.

    Python

Repositories

Showing 10 of 31 repositories
  • micro-manager Public Forked from micro-manager/micro-manager

    Microscope control and image acquisition integrated with ImageJ

    eitm-org/micro-manager's past year of commit activity
    Java 1 253 0 0 Updated Sep 10, 2026
  • peristalsis_manuscript_classifier Public

    Analysis code for Shah et al., Communications Biology (2026). Feed-forward neural network identifying EMT related signatures from peristalsis in colorectal cancer cells

    eitm-org/peristalsis_manuscript_classifier's past year of commit activity
    Python 0 MIT 0 0 0 Updated Jun 30, 2026
  • peristalsis_manuscript Public

    Analysis code for Shah et al., Communications Biology (2026). scRNA-seq, bulk RNA-seq, and patient survival analysis of peristalsis-driven invasion in colorectal cancer.

    eitm-org/peristalsis_manuscript's past year of commit activity
    Python 0 MIT 0 0 0 Updated Jun 30, 2026
  • GRAFUM Public

    Graphical Representation Analysis Framework for Uniform Methodology (GRAFUM)

    eitm-org/GRAFUM's past year of commit activity
    R 0 0 0 0 Updated Jun 12, 2026
  • chempass_similarityApp Public
    eitm-org/chempass_similarityApp's past year of commit activity
    R 0 MIT 0 0 0 Updated Apr 15, 2026
  • sarek Public Forked from nf-core/sarek

    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

    eitm-org/sarek's past year of commit activity
    Nextflow 0 MIT 558 0 0 Updated Feb 13, 2026
  • equidock_public Public Forked from octavian-ganea/equidock_public

    EquiDock: geometric deep learning for fast rigid 3D protein-protein docking

    eitm-org/equidock_public's past year of commit activity
    Roff 0 MIT 58 0 0 Updated Nov 14, 2025
  • haddock3 Public Forked from haddocking/haddock3

    Official repo of the modular BioExcel version of HADDOCK

    eitm-org/haddock3's past year of commit activity
    Python 0 Apache-2.0 65 0 1 Updated Nov 4, 2025
  • Chapter-Skyline-Automation Public

    github repo for the skyline automation chapter

    eitm-org/Chapter-Skyline-Automation's past year of commit activity
    HTML 0 MIT 0 0 0 Updated Sep 5, 2025
  • cookiecutter-pypackage Public Forked from ardydedase/cookiecutter-pypackage

    Cookiecutter template for a Python package.

    eitm-org/cookiecutter-pypackage's past year of commit activity
    Python 0 MIT 10 0 0 Updated Sep 4, 2025
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

See More

Loading…

Most used topics

Loading…