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1. Commits on Jul 16, 2023

   • version 5.7.1

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   • rigorous definition around workdir based on output directory, needed for docker

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2. Commits on Jan 27, 2023

   • updated version to 5.7.0

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   • adding srand(1234) just in case

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   • Merge branch 'master' of github.com:TransDecoder/TransDecoder into devel

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   • update

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   • update

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   • some cleanup

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3. Commits on Apr 7, 2022

   • prep for release 5.6.0

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4. Commits on Oct 5, 2020

   • updated genetic code options in help menu

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5. Commits on Oct 22, 2018

   • added option --output_dir | -O to both TransDecoder.LongOrfs and TransDecoder.Predict, as per request, so users can point to specific output directories rather than relying on the default ( basena…

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6. Commits on Oct 16, 2018

   • prep for release 5.4.0

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7. Commits on Aug 26, 2018

   • removed mention of --train

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8. Commits on May 11, 2018

   • back to devel mode

     brianjohnhaas

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   • release v5.3.0

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9. Commits on Apr 21, 2018

   • back to devel

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10. Commits on Apr 19, 2018

    • revised pipeliner and checkpointing system

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11. Commits on Apr 18, 2018

    • Release v5.2.0

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    • sync w/ latest devel

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12. Commits on Mar 27, 2018

    • always run the full final selection routines, no checkpointing

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    • release v5.1.0

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    • adding version tags

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    • improved support for genetic codes

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13. Commits on Oct 20, 2017

    • work w/ gzipped target fasta file

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14. Commits on Aug 25, 2017

    • removed --all_good_orfs option, retaining --single_best_only, and by default, reporting all good orfs that are minimally overlapping

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15. Commits on Aug 24, 2017

    • selection logic now consolidated and outside the pipe runner

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16. Commits on Aug 17, 2017

    • update to changelog inprep for v4.1 release

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    • turning off length-based auto-select

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    • update - use delim parser module to ensure proper column extraction

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    • bugfix related to new format of scores file

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17. Commits on Aug 16, 2017

    • --retain_long_orfs_mode now allows strict mode, option processing wasnt configured correctly

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18. Commits on Jul 30, 2017

    • cdhit replacement installed

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19. Commits on Jul 29, 2017

    • updated tests

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20. Commits on Jul 26, 2017

    • removed unlimited mem usage on cd-hit-est step

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    • update

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