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1. Commits on Oct 2, 2024

   • Merge pull request #202 from colindaven/patch-1

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     brianjohnhaas

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   • solve hmmer download by getting specific version

     colindaven

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2. Commits on Mar 22, 2024

   • Update README.md

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3. Commits on Sep 13, 2023

   • Merge pull request #184 from mr-c/fix_test_paths

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     brianjohnhaas

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   • Fix some test paths

     mr-c

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   • Merge pull request #183 from mr-c/python3

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   • Use 2to3 to port from Python2 to Python3

     

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4. Commits on Jul 16, 2023

   • changelog update for v5.7.1

     brianjohnhaas

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   • docker tests included for v5.7.1

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   • add test docker

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   • update for docker test

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   • version 5.7.1

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   • rigorous definition around workdir based on output directory, needed for docker

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5. Commits on May 24, 2023

   • adding blast and hammer to the docker

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   • add

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6. Commits on Feb 15, 2023

   • works with adjusted header format

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7. Commits on Jan 27, 2023

   • updated tests so formatting matches

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   • updated version to 5.7.0

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   • adding srand(1234) just in case

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   • removed URI::Escape dependency

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   • include --use_complete_orfs in TransDecoder.LongOrfs to avoid partials and internals

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   • reports correct length for sequence in fasta file

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   • calc length in final protein file generation and include in header

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   • Merge branch 'master' of github.com:TransDecoder/TransDecoder into devel

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   • turned of uri encoding of names by default

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   • support both hmmscan or hmmsearch formatting

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   • update

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   • update

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   • some cleanup

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8. Commits on Apr 7, 2022

   • prep for release 5.6.0

     brianjohnhaas

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   • removed conflict

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   • updated get_longest_ORF_per_transcript.pl to match current header formatting

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   • update for longest orf per transcript for compatibility with latest intermediates and final pep

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   • Speed up compute_base_probs.pl script

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     Yanick Paco Hagemeijer

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9. Commits on Jun 26, 2021

   • update for longest orf per transcript for compatibility with latest intermediates and final pep

     brianjohnhaas

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