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1. nextflow nextflow Public

   nextflow RNAseq pipeline for cbsu servers

   Nextflow 1 1

2. wgs wgs Public

   nextflow init for wgs modules

   Nextflow

3. deseq2-explorer deseq2-explorer Public

   A full stack web app for differential expression analysis, powered by DESeq2. Upload a count matrix, define experimental contrasts, and explore results through interactive visualizations — all in t…

   JavaScript 1

4. scRNA-WS24 scRNA-WS24 Public

   Exercises for scRNA-seq Workshop TREX x BioHPC 2024.

   Jupyter Notebook 1 2

5. sartools sartools Public

   Nextflow Pipeline for SAR_tools (all platforms)

   R 1

6. 10x 10x Public

   Modular Nextflow pipeline for 10x Genomics single-cell data (GEX, with ATAC/ARC to follow)

   Nextflow 1