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Commits on Jan 3, 2025

• Javadoc fix: all error in alignment module

  josemduarte

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Commits on Jun 12, 2024

• Fix issue s1319 Declarations should use Java collection interfaces on biojava-core and dependencies

  jlerbsc

  committed
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Commits on Apr 18, 2024

• Fix sonar issue S2293 Replace the type specification in this constructor call with the diamond operator ('<>')

  jlerbsc

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  b182121

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Commits on Feb 26, 2024

• fix: issue #1081 Sonar S1132 Strings literals should be placed on the left side when checking for equality

  jlerbsc

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Commits on Jun 27, 2023

• Sonar S2129 Constructors should not be used to instantiate 'String', 'BigInteger', 'BigDecimal' and primitive-wrapper classes (Issue #1066)

  jlerbsc

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Commits on May 21, 2023

• Fix Sonar S1130 throws declarations should not be superfluous

  jlerbsc

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Commits on Jul 26, 2022

• Fix pointers[y] is null error

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  aegugup

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Commits on Oct 21, 2021

• Unifying the way ALHOSSARY is written across different platform

  aalhossary

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Commits on Jan 3, 2019

• Automatically convert spaces to tabs

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  sbliven

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Commits on Mar 12, 2018

• Removing deprecations from v4

  josemduarte

  committed
  9dbf83c

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Commits on Sep 8, 2016

• Remove some unimplemented methods in phylo

  lafita

  committed
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• Merge alignment and phylo modules #413

  lafita

  committed
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Commits on Jul 1, 2016

• Cleanup - squid:S1858 - "toString()" should never be called on a String object

  

  Mohamed Ezzat

  committed
  082d860

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Commits on Jun 16, 2016

• squid:S2272 - "Iterator.next()" methods should throw "NoSuchElementException"

  

  Mohamed Ezzat

  committed
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Commits on Jun 15, 2016

• squid:S2063 - Comparators should be Serializable

  

  Mohamed Ezzat

  committed
  23136cb

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Commits on Apr 24, 2016

• squid:S2178 - Short-circuit logic should be used in boolean contexts

  

  Mohamed Ezzat

  committed
  837e844

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Commits on Mar 10, 2016

• Light cleanup:

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  sbliven

  committed
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• Running spacestotabs on recent changes

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  sbliven

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Commits on Mar 9, 2016

• Merge branch 'master' into removeLoadChemCompInfo

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  josemduarte

  committed
  d1b5c48

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• Removing unnecessary casts

  sbliven

  committed
  38934ac

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• More whitespace fixes

  sbliven

  committed
  af59f90

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• Converting initial spaces to tabs.

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  sbliven

  committed
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• Remove trailing whitespace globally from .java files

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  sbliven

  committed
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• Update to remove docstring

  abradle

  committed
  7affe5b

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• Merge remote-tracking branch 'upstream/master' into removeLoadChemCompInfo

  josemduarte

  committed
  892c03d

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Commits on Mar 8, 2016

• Fixing a few bugs that arose after loadChemCompInfo removal, #426

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  josemduarte

  committed
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Commits on Mar 7, 2016

• Updates to make serializable for Spark

  abradle

  committed
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Commits on Nov 17, 2015

• Generalize the GuideTree calculation using phylo

  lafita

  committed
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Commits on Nov 12, 2015

• Merge commit '248cc08c7fbbdc02249bcac0f10481127b7d3ac7'

  josemduarte

  committed
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Commits on Oct 6, 2015

• Converting all line endings to Unix.

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  sbliven

  committed
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Commits on Sep 16, 2015

• Massive refactoring: moved alignment data structures from biojava-alignment to biojava-core.

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  paolopavan

  committed
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Commits on Jan 30, 2015

• Refactoring of all package names according to #245 #242 #240

  andreasprlic

  committed
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Commits on Jan 29, 2015

• Ran Optimize Imports across the whole project.

  andreasprlic

  committed
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• Major refactoring of package names in accordance with #245 #242 #240

  andreasprlic

  committed
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