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Commits on Mar 5, 2025

• [maven-release-plugin] prepare release biojava-7.2.1

  josemduarte

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Commits on Mar 4, 2025

• Update biojava-structure/src/main/java/org/biojava/nbio/structure/io/cif/CifStructureConsumerImpl.java

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Commits on Feb 28, 2025

• Deal with missing strand_id

  josemduarte

  committed
  2841770

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• Revert "Dealing with struct_ref_seq_dif strand_id by referencing through struct_ref_seq and struct_ref"

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• Logging

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• Dealing with struct_ref_seq_dif strand_id by referencing through struct_ref_seq and struct_ref

  josemduarte

  committed
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• Deal with some missing fields in IHM

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Commits on Feb 27, 2025

• [maven-release-plugin] prepare for next development iteration

  josemduarte

  committed
  6da7fd9

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• [maven-release-plugin] prepare release biojava-7.2.0

  josemduarte

  committed
  48992a6

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• Merge pull request #1106 from josemduarte/cifparsing-lenient

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Commits on Feb 22, 2025

• Review comment

  josemduarte

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  a5b46ab

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• Fix: first model is model index 0

  josemduarte

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Commits on Feb 21, 2025

• Bugfix: ASA calculation was by default using all models. Now it will use model 1 by default. Added new constructor to choose model.

  josemduarte

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• Another safeguard, that applies to some PDB-IHM entries

  josemduarte

  committed
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• Lenient to missing atom_site.occupancy

  josemduarte

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  65d3dcd

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• Handle more missing fields in struct_ref_seq

  josemduarte

  committed
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Commits on Jan 8, 2025

• [maven-release-plugin] prepare for next development iteration

  josemduarte

  committed
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• [maven-release-plugin] prepare release biojava-7.1.4

  josemduarte

  committed
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• [maven-release-plugin] rollback the release of biojava-7.1.4

  josemduarte

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• [maven-release-plugin] prepare for next development iteration

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  76dfee8

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• [maven-release-plugin] prepare release biojava-7.1.4

  josemduarte

  committed
  f29a521

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• [maven-release-plugin] rollback the release of biojava-7.1.4

  josemduarte

  committed
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• [maven-release-plugin] prepare for next development iteration

  josemduarte

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  3ec109c

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• [maven-release-plugin] prepare release biojava-7.1.4

  josemduarte

  committed
  7286c3f

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• [maven-release-plugin] rollback the release of biojava-7.1.4

  josemduarte

  committed
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• [maven-release-plugin] prepare for next development iteration

  josemduarte

  committed
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• [maven-release-plugin] prepare release biojava-7.1.4

  josemduarte

  committed
  de1598c

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• Merge pull request #1103 from josemduarte/cifparser-gemmifile

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Commits on Jan 7, 2025

• Javadoc fix: remaining errors in structure module. Mostly obsolete references

  josemduarte

  committed
  2bbc824

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• Javadoc fix: most other errors in structure module

  josemduarte

  committed
  0c7e9f5

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• Javadoc fix: many errors in struct align package

  josemduarte

  committed
  435ebe9

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• Javadoc fix: many errors in struct align package

  josemduarte

  committed
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Commits on Jan 6, 2025

• Javadoc fix: many errors in struct align package

  josemduarte

  committed
  2b33a56

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• More lenient parsing if some fields are missing (e.g. in files output by Gemmi)

  josemduarte

  committed
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Commits on Jan 4, 2025

• Javadoc fix: some more errors from structure module

  josemduarte

  committed
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