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onbiojava-7.1.3

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Commits on Jul 22, 2024

• Removing functionality that uses mmtf.rcsb.org, now deprecated

  josemduarte

  committed
  1a98eeb

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Commits on Jun 12, 2024

• Fix issue s1319 Declarations should use Java collection interfaces on biojava-core and dependencies

  jlerbsc

  committed
  0f4983c

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Commits on May 15, 2024

• Fix issue s1319 Declarations should use Java collection interfaces on biojava-core

  jlerbsc

  committed
  1ae6b52

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Commits on Apr 24, 2024

• Use toURI instead of getFile which doesn't have file scheme

  cometbroom

  committed
  1964040

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Commits on Apr 23, 2024

• Merge pull request #1091 from jlerbsc/S2293

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  josemduarte

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  73e99ca

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Commits on Apr 18, 2024

• Fix sonar issue S2293 Replace the type specification in this constructor call with the diamond operator ('<>')

  jlerbsc

  committed
  b182121

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Commits on Apr 1, 2024

• fix container inefficiency in GenericFastaHeaderParser.java

  cinsttool

  committed
  b7a04c5

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Commits on Mar 6, 2024

• Merge pull request #1086 from jlerbsc/master

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  josemduarte

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  81e0544

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Commits on Mar 5, 2024

• fix sonar issue 2629 Logging arguments should not require evaluation

  jlerbsc

  committed
  1ac29b3

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Commits on Mar 4, 2024

• Typo

  josemduarte

  committed
  7f8f95e

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• Replacing home-made copy by Files.copy. Other minor fixes

  josemduarte

  committed
  37b5fca

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Commits on Feb 26, 2024

• fix: issue #1081 Sonar S1132 Strings literals should be placed on the left side when checking for equality

  jlerbsc

  committed
  ac75f31

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Commits on Jan 26, 2024

• Missed a RuntimeException. Changed to UncheckedIOException

  hilbertglm

  committed
  2d1f32e

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• Changed the version to 7.1.0-SNAPSHOT. Made changes per review.

  hilbertglm

  committed
  d081b12

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Commits on Jan 14, 2024

• Added access to the iterable

  hilbertglm

  committed
  26b21d7

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• Added comments

  hilbertglm

  committed
  ef665e2

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Commits on Jan 13, 2024

• Removed the MagicNumber class after finding InputStreamProvider

  hilbertglm

  committed
  fd3be7e

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• Before finding the InputStreamProvider

  hilbertglm

  committed
  96c8126

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Commits on Dec 4, 2023

• Fixing gh workflow warning and failing test

  josemduarte

  committed
  6d23660

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Commits on Jun 30, 2023

• Merge remote-tracking branch 'origin/master'

  josemduarte

  committed
  4796663

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• Init fix from sonar

  josemduarte

  committed
  96140a3

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• Cast fix from sonar

  josemduarte

  committed
  4f9cd2a

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• Regex fix from sonar

  josemduarte

  committed
  2f118bc

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• Merge pull request #1067 from jlerbsc/master

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  josemduarte

  authored
  6d07ffe

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Commits on Jun 29, 2023

• Review comment

  josemduarte

  committed
  9a5c2a9

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• Fixing #1069

  josemduarte

  committed
  5f5b036

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Commits on Jun 27, 2023

• Sonar S2129 Constructors should not be used to instantiate 'String', 'BigInteger', 'BigDecimal' and primitive-wrapper classes (Issue #1066)

  jlerbsc

  committed
  4a1863d

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Commits on May 21, 2023

• Fix Sonar S1130 throws declarations should not be superfluous

  jlerbsc

  committed
  86307e9

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Commits on Jan 30, 2023

• Merge pull request #1046 from BulkSecurityGeneratorProjectV2/fix/JLL/temporary_file_local_information_disclosure

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  josemduarte

  authored
  3747e5d

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Commits on Jan 26, 2023

• Merge pull request #1024 from aalhossary/add_file_download_validation

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  aalhossary

  authored
  1a256ed

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Commits on Jan 25, 2023

• Addressing reviewer's comments

  aalhossary

  committed
  07e65b2

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Commits on Dec 24, 2022

• Adding placeholder for several common hashing algorithms

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  aalhossary

  committed
  3c7b04f

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• Addressing reviewer's comments

  aalhossary

  committed
  630bb64

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• Minor corrections

  Show description for 06cde1b
  aalhossary

  committed
  06cde1b

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Commits on Nov 18, 2022

• vuln-fix: Temporary File Information Disclosure

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  JLLeitschuh

  and

  TeamModerne

  committed
  e3ecec5

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