Commits

Breadcrumbs

History for

onbiojava-7.1.0

User selector

All users

All time

Commit History

Commits on Jan 25, 2024

• Merge pull request #1077 from hilbertglm/20240108-scop

  Show description for 79f2062
  josemduarte

  authored
  79f2062

  Copy full SHA for 79f2062

Commits on Jan 8, 2024

• Changed the URLs to the mirrors from http to https. Changed the name of the URL path to reflect a change in the v2 naming.

  hilbertglm

  committed
  f45e018

  Copy full SHA for f45e018

Commits on Jan 5, 2024

• Updating test

  josemduarte

  committed
  a3d9437

  Copy full SHA for a3d9437

Commits on Dec 29, 2023

• Updated to Jakarta JAXB and Java 17

  hilbertglm

  committed
  d5ea96c

  Copy full SHA for d5ea96c

Commits on Jun 30, 2023

• Merge remote-tracking branch 'origin/master'

  josemduarte

  committed
  4796663

  Copy full SHA for 4796663

• Try-with from sonar

  josemduarte

  committed
  9105226

  Copy full SHA for 9105226

Commits on Jun 27, 2023

• Sonar S2129 Constructors should not be used to instantiate 'String', 'BigInteger', 'BigDecimal' and primitive-wrapper classes (Issue #1066)

  jlerbsc

  committed
  4a1863d

  Copy full SHA for 4a1863d

Commits on Jun 21, 2023

• Second fix for sonar rule 's1130' throws declarations should not be superfluous. This fix is specific to constructor declarations.

  jlerbsc

  committed
  0819819

  Copy full SHA for 0819819

Commits on Jun 2, 2023

• Cleanup

  josemduarte

  committed
  fc07139

  Copy full SHA for fc07139

Commits on Jun 1, 2023

• Merge pull request #1062 from jlerbsc/master

  Show description for 56b98c8
  josemduarte

  authored
  56b98c8

  Copy full SHA for 56b98c8

Commits on May 24, 2023

• Improvements from review comments

  josemduarte

  committed
  4d146e1

  Copy full SHA for 4d146e1

Commits on May 21, 2023

• Fix Sonar S1130 throws declarations should not be superfluous

  jlerbsc

  committed
  86307e9

  Copy full SHA for 86307e9

Commits on May 12, 2023

• Fixing empty seqres groups for cif files with no _entity

  josemduarte

  committed
  6431114

  Copy full SHA for 6431114

• Fixing empty seqres groups for pdb files with not seqres

  josemduarte

  committed
  12137bf

  Copy full SHA for 12137bf

Commits on May 11, 2023

• Handling nulls in descriptions

  josemduarte

  committed
  a8a96ec

  Copy full SHA for a8a96ec

• New test

  josemduarte

  committed
  3543eb9

  Copy full SHA for 3543eb9

Commits on May 10, 2023

• Writing out entity info in CIF

  josemduarte

  committed
  615a570

  Copy full SHA for 615a570

Commits on May 7, 2023

• Sonar S4973 '==' and '!=' should not be used when 'equals' is overridden #1052

  

  Pavan Kumar, Thummuru

  committed
  caa5789

  Copy full SHA for caa5789

Commits on Apr 16, 2023

• Sonar S4973 '==' and '!=' should not be used when 'equals' is overridden #1052

  tmrpavan

  committed
  963dc01

  Copy full SHA for 963dc01

Commits on Apr 6, 2023

• Refactoring : Adding Static constants for NUCLEOTIDE_BACKBONE_ATOMS and AMINOACID_BACKBONE_ATOMS

  

  Sreejith Nair

  committed
  a135683

  Copy full SHA for a135683

Commits on Apr 5, 2023

• Refactoring : Changes to refactor isPureTranslation method to eliminate complex conditional smell

  

  Sreejith Nair

  committed
  4676fe7

  Copy full SHA for 4676fe7

• Refactoring Decompose conditional : Changes to refactor getContactOverlapScore method to eliminate complex conditional smell

  

  Sreejith Nair

  committed
  2ddf8b0

  Copy full SHA for 2ddf8b0

• Refactoring : Extract method changes to reduce the cyclomatic complexity of getBackboneAtomArray

  

  Sreejith Nair

  committed
  bf40264

  Copy full SHA for bf40264

Commits on Apr 3, 2023

• Fixing test after PDB id obsoletion

  josemduarte

  committed
  5de0163

  Copy full SHA for 5de0163

Commits on Jan 30, 2023

• More nullpdbid tests (#1056)

  Show description for 043eb40
  

  josemduarte

  and

  sbliven

  authored
  043eb40

  Copy full SHA for 043eb40

• Merge pull request #1055 from josemduarte/fixCifSrcNatParsing

  Show description for 5218e59
  josemduarte

  authored
  5218e59

  Copy full SHA for 5218e59

• Merge pull request #1046 from BulkSecurityGeneratorProjectV2/fix/JLL/temporary_file_local_information_disclosure

  Show description for 3747e5d
  josemduarte

  authored
  3747e5d

  Copy full SHA for 3747e5d

• More comprehensive fix

  josemduarte

  committed
  5b99e7a

  Copy full SHA for 5b99e7a

Commits on Jan 29, 2023

• Fix for entity_src_nat category parsing, when some items missing

  josemduarte

  committed
  b0a1da5

  Copy full SHA for b0a1da5

Commits on Jan 26, 2023

• Merge pull request #1024 from aalhossary/add_file_download_validation

  Show description for 1a256ed
  aalhossary

  authored
  1a256ed

  Copy full SHA for 1a256ed

Commits on Dec 24, 2022

• Adding placeholder for several common hashing algorithms

  Show description for 3c7b04f
  aalhossary

  committed
  3c7b04f

  Copy full SHA for 3c7b04f

• Minor corrections

  Show description for 06cde1b
  aalhossary

  committed
  06cde1b

  Copy full SHA for 06cde1b

Commits on Nov 18, 2022

• vuln-fix: Temporary File Information Disclosure

  Show description for e3ecec5
  

  JLLeitschuh

  and

  TeamModerne

  committed
  e3ecec5

  Copy full SHA for e3ecec5

Commits on Oct 26, 2022

• Switching to new DNS name for wwpdb http file server

  josemduarte

  committed
  17a893f

  Copy full SHA for 17a893f

Commits on Jun 20, 2022

• update assembly file test to new location

  sbittrich

  committed
  1f04caf

  Copy full SHA for 1f04caf

Pagination

Previous

Next