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onbiojava-7.1.0

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Commits on Feb 23, 2024

• [maven-release-plugin] prepare release biojava-7.1.0

  josemduarte

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  1b6159d

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• Merge pull request #1080 from hilbertglm/20240113-streaming

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  josemduarte

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  c672d01

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Commits on Jan 26, 2024

• Changed the version to 7.1.0-SNAPSHOT. Made changes per review.

  hilbertglm

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Commits on Jan 25, 2024

• Merge pull request #1077 from hilbertglm/20240108-scop

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  josemduarte

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  79f2062

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Commits on Jan 8, 2024

• Changed the URLs to the mirrors from http to https. Changed the name of the URL path to reflect a change in the v2 naming.

  hilbertglm

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Commits on Jan 5, 2024

• Updating test

  josemduarte

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Commits on Jan 4, 2024

• Removed explicit versioning for JAX-B API and runtime, except for the dependencyManagement section in the POM. Reran unit tests with no errors.

  hilbertglm

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Commits on Jan 1, 2024

• Changed the JDK back to Java 11 and reran tests

  hilbertglm

  committed
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Commits on Dec 29, 2023

• Updated to Jakarta JAXB and Java 17

  hilbertglm

  committed
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Commits on Jun 30, 2023

• Merge remote-tracking branch 'origin/master'

  josemduarte

  committed
  4796663

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• Try-with from sonar

  josemduarte

  committed
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Commits on Jun 27, 2023

• Sonar S2129 Constructors should not be used to instantiate 'String', 'BigInteger', 'BigDecimal' and primitive-wrapper classes (Issue #1066)

  jlerbsc

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Commits on Jun 21, 2023

• Second fix for sonar rule 's1130' throws declarations should not be superfluous. This fix is specific to constructor declarations.

  jlerbsc

  committed
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Commits on Jun 2, 2023

• [maven-release-plugin] prepare for next development iteration

  josemduarte

  committed
  6d01b69

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• [maven-release-plugin] prepare release biojava-7.0.2

  josemduarte

  committed
  a5170b0

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• Cleanup

  josemduarte

  committed
  fc07139

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Commits on Jun 1, 2023

• Merge pull request #1062 from jlerbsc/master

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  josemduarte

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Commits on May 24, 2023

• Improvements from review comments

  josemduarte

  committed
  4d146e1

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Commits on May 21, 2023

• Fix Sonar S1130 throws declarations should not be superfluous

  jlerbsc

  committed
  86307e9

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Commits on May 12, 2023

• Fixing empty seqres groups for cif files with no _entity

  josemduarte

  committed
  6431114

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• Fixing empty seqres groups for pdb files with not seqres

  josemduarte

  committed
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Commits on May 11, 2023

• Handling nulls in descriptions

  josemduarte

  committed
  a8a96ec

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• New test

  josemduarte

  committed
  3543eb9

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Commits on May 10, 2023

• Writing out entity info in CIF

  josemduarte

  committed
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Commits on May 7, 2023

• Sonar S4973 '==' and '!=' should not be used when 'equals' is overridden #1052

  

  Pavan Kumar, Thummuru

  committed
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Commits on Apr 16, 2023

• Sonar S4973 '==' and '!=' should not be used when 'equals' is overridden #1052

  tmrpavan

  committed
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Commits on Apr 6, 2023

• [maven-release-plugin] prepare for next development iteration

  josemduarte

  committed
  24bda43

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• [maven-release-plugin] prepare release biojava-7.0.1

  josemduarte

  committed
  7b32a76

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• [maven-release-plugin] rollback the release of biojava-7.0.1

  josemduarte

  committed
  ea45217

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• [maven-release-plugin] prepare for next development iteration

  josemduarte

  committed
  30a2429

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• [maven-release-plugin] prepare release biojava-7.0.1

  josemduarte

  committed
  a8ea225

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• Refactoring : Adding Static constants for NUCLEOTIDE_BACKBONE_ATOMS and AMINOACID_BACKBONE_ATOMS

  

  Sreejith Nair

  committed
  a135683

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Commits on Apr 5, 2023

• Refactoring : Changes to refactor isPureTranslation method to eliminate complex conditional smell

  

  Sreejith Nair

  committed
  4676fe7

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• Refactoring Decompose conditional : Changes to refactor getContactOverlapScore method to eliminate complex conditional smell

  

  Sreejith Nair

  committed
  2ddf8b0

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• Refactoring : Extract method changes to reduce the cyclomatic complexity of getBackboneAtomArray

  

  Sreejith Nair

  committed
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