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Commits on Apr 5, 2017

• moving SIFTS unit test to parse local file, since file from remote location has changed (and seems to contain inconsistent data)

  andreasprlic

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Commits on Apr 4, 2017

• Refactoring FileDownload util to be a part of biojava-core project

  valasatava

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Commits on Mar 30, 2017

• [maven-release-plugin] prepare for next development iteration

  josemduarte

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  c050011

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• [maven-release-plugin] prepare release biojava-5.0.0-alpha8

  josemduarte

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• [maven-release-plugin] prepare for next development iteration

  josemduarte

  committed
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• [maven-release-plugin] prepare release biojava-5.0.0-alpha8

  josemduarte

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Commits on Mar 29, 2017

• [maven-release-plugin] prepare for next development iteration

  josemduarte

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• [maven-release-plugin] prepare release biojava-5.0.0-alpha8

  josemduarte

  committed
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• more precise comparison of parsing speed between mtf and pdb file formats

  andreasprlic

  committed
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• Merge pull request #4 from andreasprlic/mmtf105

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  josemduarte

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• cleanup

  andreasprlic

  committed
  80a4e0c

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• new unit test that compares a slightly larger structure.

  andreasprlic

  committed
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• new version of test now only compares parsing in RAM

  andreasprlic

  committed
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• Updating test after file was remediated

  josemduarte

  committed
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• adding a parsing performance unit test for mmtf, that compares with pdb format parsing.

  andreasprlic

  committed
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Commits on Mar 28, 2017

• Upgrading to mmtf 1.0.5

  josemduarte

  committed
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Commits on Mar 22, 2017

• TestBond is updated to match the updated data in structure file used for test

  

  Yana Valasatava

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Commits on Mar 21, 2017

• Create a test for the new parameters of the SmithWaterman3Daligner #552

  lafita

  committed
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• Merge branch 'master' into smwatRmsd

  lafita

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Commits on Mar 18, 2017

• Revert "[maven-release-plugin]prepare release biojava-5.0.0-alpha7"

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  josemduarte

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• [maven-release-plugin]prepare release biojava-5.0.0-alpha7

  

  Jenkins

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Commits on Feb 18, 2017

• Catching early if the representative atom array is empty

  josemduarte

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Commits on Feb 15, 2017

• Removing some warnings from empty structure names

  sbliven

  committed
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• Merge branch 'bugfixes-4.2' into master

  sbliven

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• Fix Quaternary symmetry symmetry detection bug

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  sbliven

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Commits on Feb 10, 2017

• Better rules for Quaternary symm self-alignments

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  sbliven

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Commits on Feb 6, 2017

• Merge pull request #623 from andreasprlic/fix622

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  andreasprlic

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Commits on Jan 21, 2017

• Now catching empty arrays in getCentroid

  josemduarte

  committed
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• Now catching empty arrays in getCentroid

  josemduarte

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• Less verbose logging in AsaCalculator

  josemduarte

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• Fix for #631

  josemduarte

  committed
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• Less verbose logging in AsaCalculator

  josemduarte

  committed
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• Better logging in symmetry package

  josemduarte

  committed
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• Fix for #631

  josemduarte

  committed
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Commits on Jan 13, 2017

• Set default max RMSD for SmWat3D high to maintain default behavior

  lafita

  committed
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