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if exists("syntax_on")

syntax reset

colorscheme bioSyntax

set nowrap

endif

set background=dark

" Robust Column Selection in Vim Syntax

" -- This logic can be extended for N columns

" -- To add highlighting to a column add it to the contains list (submatch)

syntax region Col1 matchgroup=Col1 start='^' end='\n' contains=Col2

syntax region Col2 matchgroup=Col2 start='\t' end='\n\@=' contains=Col3,hlite2,hlite5,hlite8

syntax region Col3 matchgroup=Col3 start='\t' end='\n\@=' contains=Col4,hlite2,hlite5,hlite8

syntax region Col4 matchgroup=Col4 start='\t' end='\n\@=' contains=Col5

syntax region Col5 matchgroup=Col5 start='\t' end='\n\@=' contains=Col6

syntax region Col6 matchgroup=Col6 start='\t' end='\n\@=' contains=strP,strM

" Submatch Definitions

syntax match strP '+' contained

syntax match strM '-' contained

syntax match hlite8 '[0-9]\([0-9]\{8}\t\)\@=' contained

syntax match hlite5 '[0-9]\([0-9]\{5}\t\)\@=' contained

syntax match hlite2 '[0-9]\([0-9]\{2}\t\)\@=' contained

" Highlighting / Theme Control

" =========================================================

highlight link Col1 chr

highlight link Col2 chrStart

highlight link Col3 chrEnd

highlight link Col4 keyword1

highlight link Col5 numeric

highlight link Col6 strandNone

highlight link strP strandPlus

highlight link strM strandMinus

highlight link hlite2 chrStart2

highlight link hlite5 chrStart2

highlight link hlite8 chrStart2