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The hydro letters are too dark to be visible on the dark background: the AAs are less visible than gaps, which is bad. A picture is worth a thousand words, I was told:
(An a3m is not quite a fasta, but it highlights fine.)
I'm not familiar enough with hydrophobicity scales to immediately tell which of the ~dozen scales of this kind the color scheme is based on, but uh. I suggest doing the following:
Make gaps a less obvious shade of grey, maybe grey70.
Use a new color scale to map the numbers to colors. RdYlBu from colorbrewer is roughly in the same neighborhood of this one.
I think I can make a proof-of-concept with that old '82 hydropathy scale (which stretches nicely from -4.5 to 4.5) later. Like, in 48 hours.
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[-]Very poor visibility in hydro mode[/-][+]VSCode: Very poor visibility in hydro mode[/+]