Module List

    aamod_ANTS_EPIwarp.m
    aamod_ANTS_build_MMtemplate.m
    aamod_ANTS_build_MMtemplate.xml
    aamod_ANTS_build_template.m
    aamod_ANTS_build_template.xml
    aamod_ANTS_build_template_meanepi.xml
    aamod_ANTS_epiwarp.xml
    aamod_ANTS_struc2_epi.xml
    aamod_ANTS_struc2epi.m
    aamod_ANTS_struc2template.m
    aamod_ANTS_struc2template.xml
    aamod_ANTS_warp.m
    aamod_ANTS_warp_ROIs.xml
    aamod_ANTS_warp_cons.xml
    aamod_ANTS_warp_epi.xml
    aamod_ANTS_warp_structural.xml
    aamod_AROMA_denoise.m
    aamod_AROMA_denoise.xml
    aamod_ASL.m
    aamod_ASL.xml
    aamod_ASL_coreg_extended_2.xml
    aamod_ASL_norm_write.xml
    aamod_ASL_norm_write_dartel.xml
    aamod_ASL_smooth.xml
    aamod_CONN.m
    aamod_CONN.xml
    aamod_CONN_valid.m
    aamod_CONN_valid.xml
    aamod_CoSMoMVPA.m
    aamod_CoSMoMVPA.xml
    aamod_GLMdenoise.m
    aamod_GLMdenoise.xml
    aamod_GLMdenoise_noepi.xml
    aamod_LI.m
    aamod_LOO_LouvainCluster.xml
    aamod_LoAd.m
    aamod_LoAd.xml
    aamod_LoAd2SPM.m
    aamod_LoAd2SPM.xml
    aamod_LouvainCluster.m
    aamod_MELODIC.m
    aamod_MELODIC.xml
    aamod_MP2RAGE.m
    aamod_MP2RAGE.xml
    aamod_applyVDM.m
    aamod_autoidentifyseries.m
    aamod_autoidentifyseries.xml
    aamod_autoidentifyseries_ge.xml
    aamod_autoidentifyseries_philips.xml
    aamod_autoidentifyseries_siemens.xml
    aamod_autoidentifyseries_timtrio.xml
    aamod_bet.m
    aamod_bet.xml
    aamod_bet_diffusion.xml
    aamod_bet_epi_masking.m
    aamod_bet_epi_masking.xml
    aamod_bet_epi_reslicing.m
    aamod_bet_epi_reslicing.xml
    aamod_bet_freesurfer.m
    aamod_bet_freesurfer.xml
    aamod_bet_meanepi.xml
    aamod_bet_nodif.xml
    aamod_bet_premask.m
    aamod_bet_premask.xml
    aamod_biascorrect.m
    aamod_biascorrect.xml
    aamod_biascorrect_ANTS.m
    aamod_biascorrect_ANTS.xml
    aamod_biascorrect_ANTS_meanepi.xml
    aamod_biascorrect_meanepi.xml
    aamod_biascorrect_segment8.m
    aamod_biascorrect_segment8.xml
    aamod_biascorrect_segment8_multichan.m
    aamod_biascorrect_segment8_multichan.xml
    aamod_biascorrect_segment8_t1.xml
    aamod_biascorrect_structural.xml
    aamod_biascorrect_t2.xml
    aamod_binarizegrey.xml
    aamod_binarizeimage.m
    aamod_binarizeimage.xml
    aamod_binaryfromlabels.m
    aamod_binarygreyfromlabels.xml
    aamod_brainmask.m
    aamod_brainmask.xml
    aamod_brainmask_native.xml
    aamod_brainmask_nativegrey.xml
    aamod_brainmask_nativewhite.xml
    aamod_brainmaskcombine.m
    aamod_brainmaskcombine.xml
    aamod_checkparameters.m
    aamod_checkparameters.xml
    aamod_clusteringXValidation.m
    aamod_clusteringXValidation.xml
    aamod_compSignal.m
    aamod_compSignal.xml
    aamod_compareoverlap.m
    aamod_compareoverlapgrey.xml
    aamod_convert_diffusion.m
    aamod_convert_diffusion.xml
    aamod_convert_diffusion_phaseencode_direction.xml
    aamod_convert_dmdx.m
    aamod_convert_epi.m
    aamod_convert_epi.xml
    aamod_convert_fieldmaps.m
    aamod_convert_fieldmaps.xml
    aamod_convert_specialseries.m
    aamod_convert_specialseries.xml
    aamod_convert_structural.m
    aamod_convert_structural.xml
    aamod_convert_t1.xml
    aamod_convert_t2.xml
    aamod_copy_image_orientation.m
    aamod_copy_image_orientation.xml
    aamod_coreg_extended.m
    aamod_coreg_extended.xml
    aamod_coreg_extended_1.m
    aamod_coreg_extended_1.xml
    aamod_coreg_extended_2.m
    aamod_coreg_extended_2.xml
    aamod_coreg_extended_2_cons.xml
    aamod_coreg_extended_2_epi.xml
    aamod_coreg_extended_2_meanepi.xml
    aamod_coreg_extended_2_rois.xml
    aamod_coreg_extended_MP2RAGE.xml
    aamod_coreg_general.m
    aamod_coreg_general.xml
    aamod_coreg_general_session.xml
    aamod_coreg_noss.m
    aamod_coreg_noss.xml
    aamod_coreg_noss_t1.xml
    aamod_coreg_rois.xml
    aamod_coreg_structural2fa.m
    aamod_coreg_structural2fa.xml
    aamod_coreg_t2_structural.xml
    aamod_dartel_createtemplate.m
    aamod_dartel_createtemplate.xml
    aamod_dartel_createtemplate_5classes.xml
    aamod_dartel_denormepi_rois.xml
    aamod_dartel_norm_write.xml
    aamod_dartel_normmni.m
    aamod_dartel_normmni.xml
    aamod_dartel_normmni_5classes.xml
    aamod_dartel_normmni_t1.xml
    aamod_decodeDMLT.m
    aamod_decodeDMLT.xml
    aamod_denoiseANLM.m
    aamod_denoiseANLM.xml
    aamod_denoiseANLM_MP2RAGE.xml
    aamod_denoiseANLM_nodicom.xml
    aamod_denorm.m
    aamod_denormepi.xml
    aamod_denormepi_rois.xml
    aamod_diffusion_applyVDM.xml
    aamod_diffusion_applytopup.m
    aamod_diffusion_applytopup.xml
    aamod_diffusion_bedpostx.m
    aamod_diffusion_bedpostx.xml
    aamod_diffusion_bet.xml
    aamod_diffusion_convert_fieldmaps.xml
    aamod_diffusion_coreg_extended_2_dki.xml
    aamod_diffusion_coreg_extended_2_dti.xml
    aamod_diffusion_dartel_denorm_dki.xml
    aamod_diffusion_dartel_denorm_dki_rois.xml
    aamod_diffusion_dartel_denorm_dti.xml
    aamod_diffusion_dartel_denorm_dti_rois.xml
    aamod_diffusion_dki_tractography_prepare.m
    aamod_diffusion_dki_tractography_prepare.xml
    aamod_diffusion_dkifit.m
    aamod_diffusion_dkifit.xml
    aamod_diffusion_dtifit.m
    aamod_diffusion_dtifit.xml
    aamod_diffusion_dtinlfit.m
    aamod_diffusion_dtinlfit.xml
    aamod_diffusion_eddy.m
    aamod_diffusion_eddy.xml
    aamod_diffusion_eddycorrect.m
    aamod_diffusion_eddycorrect.xml
    aamod_diffusion_extractnodif.m
    aamod_diffusion_extractnodif.xml
    aamod_diffusion_fieldmap2VDM.xml
    aamod_diffusion_fieldmapfromnifti.xml
    aamod_diffusion_get_dicom_fieldmap.xml
    aamod_diffusion_norm_write_dartel_dki.xml
    aamod_diffusion_norm_write_dartel_dti.xml
    aamod_diffusion_norm_write_dki.xml
    aamod_diffusion_norm_write_dti.xml
    aamod_diffusion_probtrackx.m
    aamod_diffusion_probtrackx.xml
    aamod_diffusion_probtrackxsummarize_group.m
    aamod_diffusion_probtrackxsummarize_group.xml
    aamod_diffusion_probtrackxsummarize_indv.m
    aamod_diffusion_probtrackxsummarize_indv.xml
    aamod_diffusion_roi_extract_dki.xml
    aamod_diffusion_roi_extract_dti.xml
    aamod_diffusion_roi_valid_dki.xml
    aamod_diffusion_roi_valid_dti.xml
    aamod_diffusion_smooth.xml
    aamod_diffusion_topup.m
    aamod_diffusion_topup.xml
    aamod_diffusionfromnifti.m
    aamod_diffusionfromnifti.xml
    aamod_dvars.m
    aamod_dvars.xml
    aamod_epifromnifti.m
    aamod_epifromnifti.xml
    aamod_epireg_extended_2.m
    aamod_epireg_extended_2.xml
    aamod_epireg_extended_2_meanepi.xml
    aamod_evaluatesubjectnames.m
    aamod_evaluatesubjectnames.xml
    aamod_facemasking.m
    aamod_facemasking.xml
    aamod_fconn_computematrix.m
    aamod_fconn_computematrix.xml
    aamod_fconnmatrix_seedseed.m
    aamod_fconnmatrix_seedseed.xml
    aamod_fieldmap2VDM.m
    aamod_fieldmap2VDM.xml
    aamod_fieldmapfromnifti.m
    aamod_fieldmapfromnifti.xml
    aamod_firstlevel_LI.xml
    aamod_firstlevel_contrasts.m
    aamod_firstlevel_contrasts.xml
    aamod_firstlevel_model.m
    aamod_firstlevel_model.xml
    aamod_firstlevel_model_1_config.m
    aamod_firstlevel_model_1_config.xml
    aamod_firstlevel_model_2_convolve.m
    aamod_firstlevel_model_2_convolve.xml
    aamod_firstlevel_model_3_estimate.m
    aamod_firstlevel_model_3_estimate.xml
    aamod_firstlevel_model_MVPaa.m
    aamod_firstlevel_model_MVPaa.xml
    aamod_firstlevel_model_collapsepredictors.m
    aamod_firstlevel_model_collapsepredictors.xml
    aamod_firstlevel_model_subrunsplit.m
    aamod_firstlevel_model_subrunsplit.xml
    aamod_firstlevel_threshold.m
    aamod_firstlevel_threshold.xml
    aamod_firstlevel_threshold_register2FS.xml
    aamod_freesurfer_autorecon.m
    aamod_freesurfer_autorecon1.xml
    aamod_freesurfer_autorecon2.xml
    aamod_freesurfer_autorecon3.xml
    aamod_freesurfer_autorecon_all.xml
    aamod_freesurfer_deface.m
    aamod_freesurfer_deface.xml
    aamod_freesurfer_deface_apply.m
    aamod_freesurfer_deface_apply_t2.xml
    aamod_freesurfer_denormepi_rois.xml
    aamod_freesurfer_initialise.m
    aamod_freesurfer_initialise.xml
    aamod_freesurfer_register.m
    aamod_fsl_FAST.m
    aamod_fsl_FAST.xml
    aamod_fsl_FIRST.m
    aamod_fsl_FIRST.xml
    aamod_fsl_reorient2std.m
    aamod_fsl_reorient2std_epi.xml
    aamod_fsl_reorient2std_structural.xml
    aamod_fsl_reorienttoMNI.m
    aamod_fsl_reorienttoMNI.xml
    aamod_fsl_reorienttoMNI_epi.xml
    aamod_fsl_robustFOV.m
    aamod_fsl_robustFOV.xml
    aamod_fslmaths.m
    aamod_fslmaths_bandpassfilter.xml
    aamod_fslmerge.m
    aamod_fslmerge.xml
    aamod_fslsplit.m
    aamod_fslsplit.xml
    aamod_garbagecollection.m
    aamod_garbagecollection.xml
    aamod_get_dicom_diffusion.m
    aamod_get_dicom_diffusion.xml
    aamod_get_dicom_epi.m
    aamod_get_dicom_epi.xml
    aamod_get_dicom_fieldmap.m
    aamod_get_dicom_fieldmap.xml
    aamod_get_dicom_specialseries.m
    aamod_get_dicom_specialseries.xml
    aamod_get_dicom_structural.m
    aamod_get_dicom_structural.xml
    aamod_get_dicom_t1.xml
    aamod_get_dicom_t2.xml
    aamod_get_tSNR.m
    aamod_get_tSNR.xml
    aamod_ggmfit.m
    aamod_ggmfit.xml
    aamod_globalmean.m
    aamod_globalmean.xml
    aamod_greyplot.m
    aamod_greyplot.xml
    aamod_groupLouvainCluster.xml
    aamod_halt.m
    aamod_halt.xml
    aamod_highpass.m
    aamod_highpass.xml
    aamod_highpassfilter_epi.m
    aamod_highpassfilter_epi.xml
    aamod_importfilesasstream.m
    aamod_importfilesasstream.xml
    aamod_individualLouvainCluster.xml
    aamod_input_staging.m
    aamod_input_staging_firstlevel_fConnMatrix_avg.xml
    aamod_listspikes.m
    aamod_listspikes.xml
    aamod_lossplot.m
    aamod_lossplot.xml
    aamod_make_epi_float.m
    aamod_make_epi_float.xml
    aamod_mapstreams.m
    aamod_mapstreams.xml
    aamod_mapstreams2.xml
    aamod_marsbar.m
    aamod_marsbar.xml
    aamod_mask_meanepi.xml
    aamod_mask_segment.m
    aamod_mask_segment.xml
    aamod_mask_structural.m
    aamod_mask_structural.xml
    aamod_maths.m
    aamod_maths.xml
    aamod_mean_structural.m
    aamod_mean_structural.xml
    aamod_meantimecourse_epi.m
    aamod_meantimecourse_epi.xml
    aamod_meeg_cleanartifacts.m
    aamod_meeg_cleanartifacts.xml
    aamod_meeg_connectivityanalysis.m
    aamod_meeg_connectivityanalysis.xml
    aamod_meeg_connectivitystatistics.xml
    aamod_meeg_converttoeeglab.m
    aamod_meeg_converttoeeglab.xml
    aamod_meeg_crossfrequencyanalysis.m
    aamod_meeg_crossfrequencyanalysis.xml
    aamod_meeg_crossfrequencystatistics.xml
    aamod_meeg_dipfit.m
    aamod_meeg_dipfit.xml
    aamod_meeg_epochs.m
    aamod_meeg_epochs.xml
    aamod_meeg_filter.m
    aamod_meeg_filter.xml
    aamod_meeg_get_file.m
    aamod_meeg_get_file.xml
    aamod_meeg_ica.m
    aamod_meeg_ica.xml
    aamod_meeg_icclassification.m
    aamod_meeg_icclassification.xml
    aamod_meeg_prepareheadmodel.m
    aamod_meeg_prepareheadmodel.xml
    aamod_meeg_preparesourcemodel.m
    aamod_meeg_preparesourcemodel.xml
    aamod_meeg_preparesourcereconstruction.xml
    aamod_meeg_rereference.m
    aamod_meeg_rereference.xml
    aamod_meeg_sourceatlasing.m
    aamod_meeg_sourceatlasing.xml
    aamod_meeg_sourcecreate.m
    aamod_meeg_sourcecreate.xml
    aamod_meeg_sourcereconstruction.m
    aamod_meeg_sourcereconstruction.xml
    aamod_meeg_statistics.m
    aamod_meeg_timefrequencyanalysis.m
    aamod_meeg_timefrequencyanalysis.xml
    aamod_meeg_timefrequencystatistics.xml
    aamod_meeg_timelockanalysis.m
    aamod_meeg_timelockanalysis.xml
    aamod_meeg_timelockstatistics.xml
    aamod_meg_average.m
    aamod_meg_average.xml
    aamod_meg_average_merged.xml
    aamod_meg_convert.m
    aamod_meg_convert.xml
    aamod_meg_denoise_ICA_1.m
    aamod_meg_denoise_ICA_1.xml
    aamod_meg_denoise_ICA_2_applytrajectory.m
    aamod_meg_denoise_ICA_2_applytrajectory.xml
    aamod_meg_epochs.m
    aamod_meg_epochs.xml
    aamod_meg_grandmean.m
    aamod_meg_grandmean.xml
    aamod_meg_maxfilt.m
    aamod_meg_maxfilt.xml
    aamod_meg_merge.m
    aamod_meg_merge.xml
    aamod_modelestimate.m
    aamod_movie.m
    aamod_movie.xml
    aamod_moviecorr_meantimecourse.m
    aamod_moviecorr_meantimecourse.xml
    aamod_moviecorr_summary.m
    aamod_moviecorr_summary.xml
    aamod_mti2MTR.m
    aamod_mti2MTR.xml
    aamod_mti_coreg_extended_2.xml
    aamod_mti_norm_write_dartel.xml
    aamod_mti_roi_extract.xml
    aamod_mti_roi_valid.xml
    aamod_newsubj_init.m
    aamod_newsubj_init.xml
    aamod_norm8.xml
    aamod_norm_noss.m
    aamod_norm_noss.xml
    aamod_norm_noss_cbu32channel.xml
    aamod_norm_noss_coregextended.xml
    aamod_norm_noss_diffusion_session.xml
    aamod_norm_vbm.m
    aamod_norm_vbm.xml
    aamod_norm_write.m
    aamod_norm_write.xml
    aamod_norm_write_cons.xml
    aamod_norm_write_cons_dartel.xml
    aamod_norm_write_dartel.m
    aamod_norm_write_dartel.xml
    aamod_norm_write_dartel_rois.xml
    aamod_norm_write_epi.xml
    aamod_norm_write_epi_snr.xml
    aamod_norm_write_meanepi.xml
    aamod_norm_write_meanepi_dartel.xml
    aamod_norm_write_spmts.xml
    aamod_norm_write_tSNR.xml
    aamod_normalisebytotalgrey.m
    aamod_normalisebytotalgrey.xml
    aamod_oneway_ANOVA.m
    aamod_oneway_ANOVA.xml
    aamod_pewarp_estimate.m
    aamod_pewarp_estimate.xml
    aamod_pewarp_write.m
    aamod_pewarp_write.xml
    aamod_possum.m
    aamod_possum.xml
    aamod_ppi_prepare.m
    aamod_ppi_prepare.xml
    aamod_realign.m
    aamod_realign.xml
    aamod_realign_noreslice.xml
    aamod_realign_weighted.xml
    aamod_realignunwarp.m
    aamod_realignunwarp.xml
    aamod_realignunwarpDCCN.xml
    aamod_reorientto.m
    aamod_reorientto_epi.xml
    aamod_reorientto_fieldmap.xml
    aamod_reorienttomiddle.m
    aamod_reorienttomiddle_diffusion.xml
    aamod_reorienttomiddle_epi.xml
    aamod_reorienttomiddle_structural.xml
    aamod_reorienttomiddle_t2.xml
    aamod_rescale_epi.m
    aamod_rescale_epi.xml
    aamod_reslice.m
    aamod_reslice.xml
    aamod_reslice2epi.m
    aamod_reslice2epi.xml
    aamod_resliceROI.m
    aamod_resliceROI2_epi.xml
    aamod_reslice_rois.m
    aamod_reslice_rois.xml
    aamod_reslicenativegreymask2epi.xml
    aamod_reslicenativewhitemask2epi.xml
    aamod_roi_extract.m
    aamod_roi_extract_epi.xml
    aamod_roi_extract_structural.xml
    aamod_roi_valid.m
    aamod_roi_valid_epi.xml
    aamod_roi_valid_structural.xml
    aamod_rois_getvalues.m
    aamod_scrub_epi.m
    aamod_scrub_epi.xml
    aamod_secondlevel_CoSMoMVPA.m
    aamod_secondlevel_CoSMoMVPA.xml
    aamod_secondlevel_GIFT.m
    aamod_secondlevel_GIFT.xml
    aamod_secondlevel_LI.xml
    aamod_secondlevel_contrasts.m
    aamod_secondlevel_contrasts.xml
    aamod_secondlevel_model.m
    aamod_secondlevel_model.xml
    aamod_secondlevel_model_spmts.xml
    aamod_secondlevel_randomise.m
    aamod_secondlevel_randomise.xml
    aamod_secondlevel_randomise_spmts.xml
    aamod_secondlevel_randomise_threshold.m
    aamod_secondlevel_randomise_threshold.xml
    aamod_secondlevel_threshold.m
    aamod_secondlevel_threshold.xml
    aamod_secondlevel_threshold_register2FS.xml
    aamod_seedconnectivity.m
    aamod_seedconnectivity.xml
    aamod_seedconnectivity_rois.xml
    aamod_segment.m
    aamod_segment.xml
    aamod_segment8.m
    aamod_segment8.xml
    aamod_segment8_multichan.xml
    aamod_segment8_noT2.xml
    aamod_segment8_t1.xml
    aamod_segment_structural.xml
    aamod_segmentvbm8.m
    aamod_segmentvbm8.xml
    aamod_slicetiming.m
    aamod_slicetiming.xml
    aamod_smooth.m
    aamod_smooth.xml
    aamod_smooth_cons.xml
    aamod_smooth_epi_snr.xml
    aamod_smooth_segment.xml
    aamod_smooth_spmts.xml
    aamod_smooth_tSNR.xml
    aamod_special_convert_fieldmaps.xml
    aamod_special_get_dicom_fieldmap.xml
    aamod_split.m
    aamod_split_epi.xml
    aamod_structural_overlay.m
    aamod_structural_overlay.xml
    aamod_structuralfromnifti.m
    aamod_structuralfromnifti.xml
    aamod_structuralstats.m
    aamod_structuralstats.xml
    aamod_study_init.m
    aamod_study_init.xml
    aamod_tSNR_epi.m
    aamod_tSNR_epi.xml
    aamod_tdt_decode.m
    aamod_tdt_decode.xml
    aamod_tdt_decode_connectivity.xml
    aamod_tdt_decode_roi.xml
    aamod_tdt_firstlevel_statistics.m
    aamod_tdt_firstlevel_statistics.xml
    aamod_tdt_firstlevel_statistics_connectivity.xml
    aamod_tdt_firstlevel_statistics_roi.xml
    aamod_tdt_secondlevel_model.xml
    aamod_tdt_secondlevel_prevalence.m
    aamod_tdt_secondlevel_prevalence.xml
    aamod_tdt_secondlevel_prevalence_connectivity.xml
    aamod_tdt_secondlevel_prevalence_roi.xml
    aamod_temporalfilter.m
    aamod_temporalfilter.xml
    aamod_tensor_ica.m
    aamod_tensor_ica.xml
    aamod_tensorica_template.fsf
    aamod_tissue_spectrum.m
    aamod_tissue_spectrum.xml
    aamod_tissue_spectrum_summarize.m
    aamod_tissue_spectrum_summarize.xml
    aamod_tissue_wavelets.m
    aamod_tissue_wavelets.xml
    aamod_tissue_wavelets_summarize.m
    aamod_tissue_wavelets_summarize.xml
    aamod_trimslices_epi.m
    aamod_trimslices_epi.xml
    aamod_tsdiffana.m
    aamod_tsdiffana.xml
    aamod_unnormalise_rois.m
    aamod_unnormalise_rois.xml
    aamod_unnormalise_rois2.m
    aamod_unnormalise_seeds.xml
    aamod_unnormalise_targets.xml
    aamod_unzip_epi.xml
    aamod_unzip_multichan.xml
    aamod_unzip_t1.xml
    aamod_unzipstream.m
    aamod_vois_extract.m
    aamod_vois_extract.xml
    aamod_waveletdespike.m
    aamod_waveletdespike.xml
    aamod_wholebrainepifromnifti.xml