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Automatic Analysis relies on several externally-developed packages and functions. These are provided for convenience and to ensure compatibility; all software retains the license of its original distribution.

Packages

Name Version Last Updated URL Maintainer
cluster/SGE 19 December 2016 https://www.mathworks.com/matlabcentral/fileexchange/52816-parallel-computing-toolbox-integration-for-matlab-distributed-computing-server-with-grid-engine Tibor Auer
DKI_Toolbox 31 August 2017 http://www.mrc-cbu.cam.ac.uk/people/rafael.henriques Tibor Auer
JSONlab 22 July 2015 http://www.mathworks.com/matlabcentral/fileexchange/33381-jsonlab--a-toolbox-to-encode-decode-json-files-in-matlab-octave Tibor Auer
MEG 23 April 2015 http://www.mrc-cbu.cam.ac.uk/people/rik.henson Tibor Auer
MFP r1.5.2 (mod - compatibility with previous MATLABs) 03 Jun 2016 http://www.medizin.uni-tuebingen.de/kinder/en/research/neuroimaging/software/ Tibor Auer
MRtools 10 Apr 2018 http://mrtools.mgh.harvard.edu/index.php?title=Downloads Tibor Auer
PEwarp 08 May 2012 Alejandro Vicente Grabovetsky
surfacerender http://jonathanpeelle.net Jonathan Peele
TFCE r88 (mod - cg_get_tfce_results accepts input) 3 Jun 2016 http://dbm.neuro.uni-jena.de/tfce/ Tibor Auer
tsdiffana 09 Jun 2016 https://sourceforge.net/p/spmtools/tsdiffana/code/ci/master/tree Tibor Auer
XML_IO_Tools RC (do not update!) 13 February 2010 http://www.mathworks.com/matlabcentral/fileexchange/12907-xml-io-tools Tibor Auer

Functions

Name Version Last Updated URL Maintainer
calculateDFA.m 16 April 2026 https://doi.org/10.6084/m9.figshare.12284099 Tibor Auer
calculateFEI.m 16 April 2026 https://github.com/rhardstone/fEI Tibor Auer
catstruct.m (mod) 22 July 2015 http://www.mathworks.com/matlabcentral/fileexchange/7842-catstruct Tibor Auer
colorspace.m 01 August 2015 http://www.mathworks.com/matlabcentral/fileexchange/28790-colorspace-transformations Tibor Auer
cor2mni.m 09 Jun 2016 http://www.alivelearn.net/?m=201006 Tibor Auer
cprintf.m 22 July 2015 http://www.mathworks.com/matlabcentral/fileexchange/24093-cprintf-display-formatted-colored-text-in-the-command-window Tibor Auer
distinguishable_colors.m (mod) 01 August 2015 http://www.mathworks.com/matlabcentral/fileexchange/29702-generate-maximally-perceptually-distinct-colors Tibor Auer
ggmfit.m http://www.ru.nl/people/donders/beckmann-c Alejandro Vicente Grabovetsky
imagescnan.m 2.1 16 September 2015 http://www.mathworks.com/matlabcentral/fileexchange/20516-imagescnan-m-v2-1--aug-2009- Tibor Auer
resize_img.m 21 March 2017 http://www0.cs.ucl.ac.uk/staff/gridgway/vbm Tibor Auer
rotateticklabel.m (mod) http://www.mathworks.com/matlabcentral/fileexchange/29800-scenes-objects-classification-toolbox Tibor Auer
sscanfitem.m 22 July 2015 https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall Tibor Auer