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Specific debugs and update local settings - #198

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jpeelle merged 61 commits into
automaticanalysis:masterfrom
tiborauer:master
Jul 9, 2019
Merged

Specific debugs and update local settings#198
jpeelle merged 61 commits into
automaticanalysis:masterfrom
tiborauer:master

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@tiborauer

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  • Debug:
    • extract bvals/bvecs from DICOM for GE diffusion
    • update aamod_listspikes according to 'new' tsdiffana
  • Update settings for RHUL and UEA

DEBUG: convert SIEMENS fieldmaps
DEBUG: tsdiffana (remove test)
UPDATE: tsdiffplot (interpretability)
DEBUG: tsdiffana after realignunwarp
DEBUG: tsdiffana report
DEBUG: firstlevel contrast: allow eachagainstbaseline even if no cons…
DEBUG: secondlevel model report in case of multiple firstlevel contrasts
DEBUG: unnecessary replication of bet report
DEBUG: secondlevel threshold without structural can find template
DEBUG: dartel_denorm (+decoreg)
NEW FEATURE: append optional stream
DEBUG: RSA - CoSMoMVPA (aa_doprocessing_onetask has been also changed…
UPDATE: CoSMoMVPA settings for RSA and Classification
DEBUG: CoSMoMVPA with Classification task
DEBUG: generic norm_write(_dartel)
DEBUG: generic coreg_extended_2 and norm_write(_dartel)
DEBUG: connect with general purpose modules
DEBUG: connect with general purpose modules
UPDATE: diagnostics - more intuitive tsdiffana plots, and consistent …
DEBUG: freesurfer_register on study level
@jpeelle
jpeelle merged commit ccfb72e into automaticanalysis:master Jul 9, 2019
tiborauer added a commit that referenced this pull request Jan 24, 2022
FIX - multilevel stream retrieval + empty stream
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2 participants