Tibor - #151
Conversation
… to allow felxibility)
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Are you ready for me to test this? |
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Yes!
Vale,
Auer, Tibor ('99 Ph)
From: Johan Carlin
Sent: 26 July 2018 11:52
To: rhodricusack/automaticanalysis
Cc: Tibor Auer; Author
Subject: Re: [rhodricusack/automaticanalysis] Tibor (#151)
Are you ready for me to test this?
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You broke the test by cleaning up /imaging/ta02/Temp... Probably I need to make my tests a bit less dependent on hard-coded paths. :-) Which ds114 version is the BIDS114 user script using? The full version? I downloaded the reduced nipype2017 version, but that one is missing the task you're using... |
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I am sorry! I forgot that BIDS examples are using data in my imaging space. Maybe we should put it into the aa folder in /imaging/local…
The dataset is available here: /imaging/ta02/data/BIDS/ds114.tar (the 7T dataset is also in that folder).
Vale,
Tibor
Auer, Tibor (Ph '99)
From: Johan Carlin <[email protected]>
Sent: Thursday, July 26, 2018 5:01 PM
To: rhodricusack/automaticanalysis <[email protected]>
Cc: Tibor Auer <[email protected]>; Author <[email protected]>
Subject: Re: [rhodricusack/automaticanalysis] Tibor (#151)
You broke the test by cleaning up /imaging/ta02/Temp... Probably I need to make my tests a bit less dependent on hard-coded paths. :-)
Which ds114 version is the BIDS114 user script using? The full version? I downloaded the reduced nipype2017 version, but that one is missing the task you're using...
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Is this a modified version of ds114? I was hoping these BIDS examples could become the core of a new set of AA tests that are truly site independent, ie do not require access to the CBU imaging system to run. Similarly, is the 7T BIDS example an original dataset from openneuro? |
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They are unmodified (on subject level and below). I only removed all but four subjects to reduce processing. |
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And yes, I agree! We have already suggested that these (or the spm demo from Rik) BIDS datasets should be used for benchmarking. |
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Cool. I have a PR coming up that makes it possible to import only a subset of subjects from a BIDS dataset, so I think we'll be able to make this completely programmatic and reproducible. |
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Looks good, all tests passed. Merging... |
ENH - MEEG: FOI for connectivity
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