Tibor - #149

Job40 on <a href="matlab: cd('/imaging/jc01/aatest/cbu/tmp/MTI_aa/MTI/aamod_dartel_norm_write_00001/S01')">subject "S01" - MRI:CBU140905_CAMCAN_CALIBRATIONS/20141001_153018</a> had an error: aa error:
No inputs obtained for stream structural! 
        Module aamod_segment8_multichan might not have crteated it.

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Parallel process ID 97540
INFO: Current MATLAB version 9.2.0.556344 (R2017a) suitable for this aa 5.4.0 (cb0cf0b6ff55a35af77465208ac959cc85d43285) Jun 2018 

INFO: Current aa version 5.4.0 (cb0cf0b6ff55a35af77465208ac959cc85d43285) Jun 2018 suitable for this user script

INITIALISATION MODULE aamod_checkparameters: Check user parameters
INITIALISATION MODULE aamod_evaluatesubjectnames: Check raw data for subject "S01" - MRI:140905 
INITIALISATION MODULE aamod_evaluatesubjectnames: Check raw data for subject "S02" - MRI:140910
INITIALISATION MODULE aamod_study_init: aa initialise study
INITIALISATION MODULE aamod_newsubj_init: Create subject directory for subject "S01" - MRI:CBU140905_CAMCAN_CALIBRATIONS/20141001_153018
INITIALISATION MODULE aamod_newsubj_init: Create subject directory for subject "S02" - MRI:CBU140910_CAMCAN_CALIBRATIONS/20141002_155503
Stage aamod_get_dicom_structural input autoidentifyseries comes from aamod_autoidentifyseries_timtrio which is 1 dependencies prior
Stage aamod_convert_structural input dicom_structural comes from aamod_get_dicom_structural which is 1 dependencies prior
Stage aamod_biascorrect_structural input structural comes from aamod_convert_structural which is 1 dependencies prior 
Stage aamod_coreg_extended_1 input structural comes from aamod_biascorrect_structural which is 1 dependencies prior
Stage aamod_segment8_multichan input structural comes from aamod_coreg_extended_1 which is 1 dependencies prior 
Stage aamod_dartel_createtemplate input dartelimported_grey comes from aamod_segment8_multichan which is 1 dependencies prior 
Stage aamod_dartel_createtemplate input dartelimported_white comes from aamod_segment8_multichan which is 1 dependencies prior
Stage aamod_dartel_norm_write input structural comes from aamod_segment8_multichan which is 2 dependencies prior
Stage aamod_dartel_norm_write input dartel_template comes from aamod_dartel_createtemplate which is 1 dependencies prior
Stage aamod_dartel_norm_write input dartel_flowfield comes from aamod_dartel_createtemplate which is 1 dependencies prior
Stage aamod_dartel_norm_write input dartel_templatetomni_xfm comes from aamod_dartel_createtemplate which is 1 dependencies prior
Stage aamod_get_dicom_specialseries input autoidentifyseries comes from aamod_autoidentifyseries_timtrio which is 8 dependencies prior
Stage aamod_convert_specialseries input dicom_MTI comes from aamod_get_dicom_specialseries which is 1 dependencies prior
Stage aamod_MTI2MTR input MTI comes from aamod_convert_specialseries which is 1 dependencies prior
Stage aamod_MTI2MTR input MTI_dicom_header comes from aamod_convert_specialseries which is 1 dependencies prior
Stage aamod_MTI_coreg_extended_2 input t1totemplate_xfm comes from aamod_coreg_extended_1 which is 7 dependencies prior
Stage aamod_MTI_coreg_extended_2 input MTR comes from aamod_MTI2MTR which is 1 dependencies prior
Stage aamod_MTI_coreg_extended_2 input MTI_baseline comes from aamod_MTI2MTR which is 1 dependencies prior
Stage aamod_MTI_coreg_extended_2 input aamod_coreg_extended_1_00001.structural comes from aamod_coreg_extended_1 which is 7 dependencies prior
Stage aamod_MTI_norm_write_dartel input dartel_template comes from aamod_dartel_createtemplate which is 6 dependencies prior
Stage aamod_MTI_norm_write_dartel input dartel_templatetomni_xfm comes from aamod_dartel_norm_write which is 5 dependencies prior
Stage aamod_MTI_norm_write_dartel input dartel_flowfield comes from aamod_dartel_createtemplate which is 6 dependencies prior
Stage aamod_MTI_norm_write_dartel input structural comes from aamod_dartel_norm_write which is 5 dependencies prior
Stage aamod_MTI_norm_write_dartel input MTR comes from aamod_MTI_coreg_extended_2 which is 1 dependencies prior
Stage aamod_MTI_roi_extract input MTR comes from aamod_MTI_norm_write_dartel which is 1 dependencies prior
Stage aamod_MTI_roi_valid input roidata_MTR comes from aamod_MTI_roi_extract which is 1 dependencies prior
Stage aamod_MTI_roi_extract input MTR comes from aamod_MTI_norm_write_dartel which is 1 dependencies prior
Stage aamod_MTI_roi_valid input roidata_MTR comes from aamod_MTI_roi_extract which is 1 dependencies prior
/usr/bin/dot
INFO: pool profile CBU_Cluster found
INFO: pool Torque is detected
WARNING: Renaming output structural of aamod_segment8_multichan_00001 to .
  It might breake dependency for the consecuting module(s).
  Make sure that you know what you are doing!
REMOVED: aamod_segment8_multichan_00001 output stream: structural
WARNING: Renaming output t2 of aamod_segment8_multichan_00001 to .
  It might breake dependency for the consecuting module(s).
  Make sure that you know what you are doing!
REMOVED: aamod_segment8_multichan_00001 output stream: t2
WARNING: Renaming output structural of aamod_segment8_multichan_00001 to .
  It might breake dependency for the consecuting module(s).
  Make sure that you know what you are doing!


**** automatic analysis failed - see reason and line numbers below
ERROR: Stream structural of module aamod_segment8_multichan not found!

ans =
    'aa error:
     Inputstream dicom_diffusion of module aamod_convert_diffusion_phaseencode_direction_00001 generated by aamod_get_dicom_diffusion_00001 not found!
     '
K>> err.stack(1)
ans = 
  struct with fields:

    file: '/home/jc01/matlab/aa5/aa_engine/aas_log.m'
    name: 'aas_log'
    line: 63
K>> err.stack(2)
ans = 
  struct with fields:

    file: '/home/jc01/matlab/aa5/aa_toolbox/provenance/aa_provenance.m'
    name: 'aa_provenance.addModule'
    line: 243
K>> err.stack(3)
ans = 
  struct with fields:

    file: '/home/jc01/matlab/aa5/aa_toolbox/aa_report.m'
    name: 'aa_report'
    line: 94
K>> err.stack(4)
ans = 
  struct with fields:

    file: '/imaging/jc01/aatest/cbu/aa_user_diffusion_with_topup.m'
    name: 'aa_user_diffusion_with_topup'
    line: 60