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Error on MaCOS #384

Description

@TamerGezici

A lab member is running into this error when using aa in MacOS:

MODULE aamod_norm_write RUNNING: SPM normalisation write (stream EPI) for /Volumes/ElifOymagil/new_participants_analysis/analysis/prep/aamod_norm_write_00001/sub-01/tactile_run-01
Loaded datecheck was XjjaG81ajY/DKnn2FLnkUw== and calc XjjaG81ajY/DKnn2FLnkUw==
Loaded datecheck was hvTVm+EkvkvqpY1iv+VvSw== and calc hvTVm+EkvkvqpY1iv+VvSw==
Previous copying of files did not complete, will recopy
 retrieve stream forward_deformation_field [checksum match, not recopied] from /Volumes/ElifOymagil/new_participants_analysis/analysis/prep/aamod_segment8_00001/sub-01 to /Volumes/ElifOymagil/new_participants_analysis/analysis/prep/aamod_norm_write_00001/sub-01
 retrieve stream structural [checksum match, not recopied] from /Volumes/ElifOymagil/new_participants_analysis/analysis/prep/aamod_segment8_00001/sub-01 to /Volumes/ElifOymagil/new_participants_analysis/analysis/prep/aamod_norm_write_00001/sub-01
 retrieving stream epi from /Volumes/ElifOymagil/new_participants_analysis/analysis/prep/aamod_coreg_extended_2_epi_00001/sub-01/tactile_run-01 to /Volumes/ElifOymagil/new_participants_analysis/analysis/prep/aamod_norm_write_00001/sub-01/tactile_run-01
***LINUX ERROR FROM SHELL zsh:1: command not found: setenv
ln: /Volumes/ElifOymagil/new_participants_analysis/analysis/prep/aamod_norm_write_00001/sub-01/tactile_run-01/rasub-01_ses-01_task-tactile_run-01_bold_001.nii: Operation not supported

***WHILE RUNNING COMMAND
setenv TERM dumb;ln -f /Volumes/ElifOymagil/new_participants_analysis/analysis/prep/aamod_coreg_extended_2_epi_00001/sub-01/tactile_run-01/rasub-01_ses-01_task-tactile_run-01_bold_001.nii /Volumes/ElifOymagil/new_participants_analysis/analysis/prep/aamod_norm_write_00001/sub-01/tactile_run-01/rasub-01_ses-01_task-tactile_run-01_bold_001.nii


**** automatic analysis failed - see reason and line numbers below
***WITH ENVIRONMENT VARIABLES
USER=elifoymagil
COMMAND_MODE=unix2003
__CFBundleIdentifier=com.mathworks.matlab
PATH=/usr/bin:/bin:/usr/sbin:/sbin
LOGNAME=elifoymagil
DISPLAY=/private/tmp/com.apple.launchd.SDaBwJTZo9/org.xquartz:0
SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.sR2PUGZgMZ/Listeners
HOME=/Users/elifoymagil
SHELL=/bin/zsh
TMPDIR=/var/folders/r2/xdx1j0697bl2gstgqmnxnv1r0000gn/T/
MATLAB_USE_USERWORK=
__CF_USER_TEXT_ENCODING=0x1F5:0x23:0x18
XPC_SERVICE_NAME=application.com.mathworks.matlab.1654994.1757910
XPC_FLAGS=0x0
LC_NUMERIC=C
LANG=tr_TR.UTF-8
ICU_TIMEZONE_FILES_DIR=/Applications/MATLAB_R2022a.app/bin/icutzdata
KMP_HANDLE_SIGNALS=0
MKL_NUM_THREADS=
MKL_DOMAIN_NUM_THREADS=
KMP_BLOCKTIME=1
KMP_STACKSIZE=512k
KMP_INIT_AT_FORK=false
MEMKIND_HEAP_MANAGER=TBB
__KMP_REGISTERED_LIB_1667=0x1150ad1a8-cafe6253-libiomp5.dylib
FSLDIR=/Volumes/ElifSanDisk/fsl
FSLOUTPUTTYPE=NIFTI_GZ
SPMDIR=/Users/elifoymagil/Downloads/spm12
SPM_NUM_THREADS=1
TERM=dumb
SHLVL=0
PWD=/Volumes/ElifOymagil/new_participants_analysis/analysis
OLDPWD=/Volumes/ElifOymagil/new_participants_analysis/analysis
_=/usr/bin/env

for help, see the aa wiki
Error using aas_log
aa error:
see above (or set aap.options.verbose)


Error in aas_shell (line 62)
    aas_log([],stopforerrors,sprintf('***WITH ENVIRONMENT VARIABLES\n%s',wenv));

Error in aas_retrieve_inputs_part2 (line 176)
                                    aas_shell(cmd);

Error in aa_doprocessing_onetask (line 184)
                    aap=aas_retrieve_inputs_part2(aap,streamfiles{inpind});

Error in aaq_localsingle/runall (line 15)
                aa_doprocessing_onetask(obj.aap,job.task,job.k,job.indices);

Error in aa_doprocessing (line 361)
            taskqueue.runall(dontcloseexistingworkers, false);

Error in prep_sample (line 41)
aa_doprocessing(aap); % This is where the analysis begins

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