Hello all,
We occasionally come across BIDS data that has the nifti files already unzipped (i.e., the data directories will be populated with foo.nii rather than foo.nii.gz.)
However, aas_processBIDS expects to find .gz files and fails if it can't.
Is there a reason aas_processBIDS couldn't also check if the files have already been unzipped and use those?
Our workaround has been to go into the data and re-zip all the nifti files. Modifying aas_processBIDS to be more flexible seems like a more sensible solution, but I'm never sure what is and isn't a violation of the BIDS standard.
Regards,
Mike
Hello all,
We occasionally come across BIDS data that has the nifti files already unzipped (i.e., the data directories will be populated with foo.nii rather than foo.nii.gz.)
However, aas_processBIDS expects to find .gz files and fails if it can't.
Is there a reason aas_processBIDS couldn't also check if the files have already been unzipped and use those?
Our workaround has been to go into the data and re-zip all the nifti files. Modifying aas_processBIDS to be more flexible seems like a more sensible solution, but I'm never sure what is and isn't a violation of the BIDS standard.
Regards,
Mike