Hello all,
Our lab has used aas_processBIDS in the past, which has worked very nicely.
However, we’re currently trying to use a dataset we downloaded from openfmri (specifically, the resting state data at https://openfmri.org/dataset/ds000224/).
aas_processBIDS cannot parse this data.
The problem appears to be directory structure in ds000224 does not conform to the BIDS standard (at least not as described in https://www.nature.com/articles/sdata201644).
aa expects something like
my_dataset/sub-01/anat/
my_dataset/sub-01/func/
my_dataset/sub-02/anat/
my_dataset/sub-02/func/
etc
ds000224 is organized like
my_dataset/sub-01/sess-func01/func/
my_dataset/sub-01/sess-func02/func/
my_dataset/sub-01/sess-struct01/anat/
etc
Yet, openfmri claims ds000224 is BIDS compliant (I ran it through their validator). Is this a change to the BIDS standard that aa doesn’t understand? Is there an option in aap I need to set? Is there some tool I need to use to rearrange this into the kind of BIDS aa understands?
Thanks for any help,
Mike
Hello all,
Our lab has used aas_processBIDS in the past, which has worked very nicely.
However, we’re currently trying to use a dataset we downloaded from openfmri (specifically, the resting state data at https://openfmri.org/dataset/ds000224/).
aas_processBIDS cannot parse this data.
The problem appears to be directory structure in ds000224 does not conform to the BIDS standard (at least not as described in https://www.nature.com/articles/sdata201644).
aa expects something like
my_dataset/sub-01/anat/
my_dataset/sub-01/func/
my_dataset/sub-02/anat/
my_dataset/sub-02/func/
etc
ds000224 is organized like
my_dataset/sub-01/sess-func01/func/
my_dataset/sub-01/sess-func02/func/
my_dataset/sub-01/sess-struct01/anat/
etc
Yet, openfmri claims ds000224 is BIDS compliant (I ran it through their validator). Is this a change to the BIDS standard that aa doesn’t understand? Is there an option in aap I need to set? Is there some tool I need to use to rearrange this into the kind of BIDS aa understands?
Thanks for any help,
Mike