.. currentmodule:: pyarrow
Apache Arrow defines columnar array data structures by composing type metadata with memory buffers, like the ones explained in the documentation on :ref:`Memory and IO <io>`. These data structures are exposed in Python through a series of interrelated classes:
- Type Metadata: Instances of
pyarrow.DataType, which describe the type of an array and govern how its values are interpreted - Schemas: Instances of
pyarrow.Schema, which describe a named collection of types. These can be thought of as the column types in a table-like object. - Arrays: Instances of
pyarrow.Array, which are atomic, contiguous columnar data structures composed from Arrow Buffer objects - Record Batches: Instances of
pyarrow.RecordBatch, which are a collection of Array objects with a particular Schema - Tables: Instances of
pyarrow.Table, a logical table data structure in which each column consists of one or morepyarrow.Arrayobjects of the same type.
We will examine these in the sections below in a series of examples.
Apache Arrow defines language agnostic column-oriented data structures for array data. These include:
- Fixed-length primitive types: numbers, booleans, date and times, fixed size binary, decimals, and other values that fit into a given number
- Variable-length primitive types: binary, string
- Nested types: list, map, struct, and union
- Dictionary type: An encoded categorical type (more on this later)
Each data type in Arrow has a corresponding factory function for creating an instance of that type object in Python:
>>> import pyarrow as pa
>>> t1 = pa.int32()
>>> t2 = pa.string()
>>> t3 = pa.binary()
>>> t4 = pa.binary(10)
>>> t5 = pa.timestamp('ms')
>>> t1
DataType(int32)
>>> print(t1)
int32
>>> print(t4)
fixed_size_binary[10]
>>> print(t5)
timestamp[ms]Note
Different data types might use a given physical storage. For example,
int64, float64, and timestamp[ms] all occupy 64 bits per value.
These objects are metadata; they are used for describing the data in arrays,
schemas, and record batches. In Python, they can be used in functions where the
input data (e.g. Python objects) may be coerced to more than one Arrow type.
The :class:`~pyarrow.Field` type is a type plus a name and optional user-defined metadata:
>>> f0 = pa.field('int32_field', t1)
>>> f0
pyarrow.Field<int32_field: int32>
>>> f0.name
'int32_field'
>>> f0.type
DataType(int32)Arrow supports nested value types like list, map, struct, and union. When creating these, you must pass types or fields to indicate the data types of the types' children. For example, we can define a list of int32 values with:
>>> t6 = pa.list_(t1)
>>> t6
ListType(list<item: int32>)A struct is a collection of named fields:
>>> fields = [
... pa.field('s0', t1),
... pa.field('s1', t2),
... pa.field('s2', t4),
... pa.field('s3', t6),
... ]
>>> t7 = pa.struct(fields)
>>> print(t7)
struct<s0: int32, s1: string, s2: fixed_size_binary[10], s3: list<item: int32>>For convenience, you can pass (name, type) tuples directly instead of
:class:`~pyarrow.Field` instances:
>>> t8 = pa.struct([('s0', t1), ('s1', t2), ('s2', t4), ('s3', t6)])
>>> print(t8)
struct<s0: int32, s1: string, s2: fixed_size_binary[10], s3: list<item: int32>>
>>> t8 == t7
TrueSee :ref:`Data Types API <api.types>` for a full listing of data type functions.
The :class:`~pyarrow.Schema` type is similar to the struct array type; it
defines the column names and types in a record batch or table data
structure. The :func:`pyarrow.schema` factory function makes new Schema objects in
Python:
>>> my_schema = pa.schema([('field0', t1),
... ('field1', t2),
... ('field2', t4),
... ('field3', t6)])
>>> my_schema
field0: int32
field1: string
field2: fixed_size_binary[10]
field3: list<item: int32>
child 0, item: int32In some applications, you may not create schemas directly, only using the ones that are embedded in :ref:`IPC messages <ipc>`.
Schemas are immutable, which means you can't update an existing schema, but you can create a new one with updated values using :meth:`Schema.set`.
>>> updated_field = pa.field('field0_new', pa.int64())
>>> my_schema2 = my_schema.set(0, updated_field)
>>> my_schema2
field0_new: int64
field1: string
field2: fixed_size_binary[10]
field3: list<item: int32>
child 0, item: int32For each data type, there is an accompanying array data structure for holding memory buffers that define a single contiguous chunk of columnar array data. When you are using PyArrow, this data may come from IPC tools, though it can also be created from various types of Python sequences (lists, NumPy arrays, pandas data).
A simple way to create arrays is with pyarrow.array, which is similar to
the numpy.array function. By default PyArrow will infer the data type
for you:
>>> arr = pa.array([1, 2, None, 3])
>>> arr
<pyarrow.lib.Int64Array object at ...>
[
1,
2,
null,
3
]But you may also pass a specific data type to override type inference:
>>> pa.array([1, 2], type=pa.uint16())
<pyarrow.lib.UInt16Array object at ...>
[
1,
2
]The array's type attribute is the corresponding piece of type metadata:
>>> arr.type
DataType(int64)Each in-memory array has a known length and null count (which will be 0 if there are no null values):
>>> len(arr)
4
>>> arr.null_count
1Scalar values can be selected with normal indexing. pyarrow.array converts
None values to Arrow nulls; we return the special pyarrow.NA value for
nulls:
>>> arr[0]
<pyarrow.Int64Scalar: 1>
>>> arr[2]
<pyarrow.Int64Scalar: None>Arrow data is immutable, so values can be selected but not assigned.
Arrays can be sliced without copying:
>>> arr[1:3]
<pyarrow.lib.Int64Array object at ...>
[
2,
null
]As mentioned in the above section, the Python object None is always
converted to an Arrow null element on the conversion to pyarrow.Array. For
the float NaN value which is either represented by the Python object
float('nan') or numpy.nan we normally convert it to a valid float
value during the conversion. If an integer input is supplied to
pyarrow.array that contains np.nan, ValueError is raised.
To handle better compatibility with Pandas, we support interpreting NaN values as
null elements. This is enabled automatically on all from_pandas function and
can be enabled on the other conversion functions by passing from_pandas=True
as a function parameter.
pyarrow.array is able to infer the type of simple nested data structures
like lists:
>>> nested_arr = pa.array([[], None, [1, 2], [None, 1]])
>>> print(nested_arr.type)
list<item: int64>pyarrow.array can create an alternate list type called ListView:
>>> nested_arr = pa.array([[], None, [1, 2], [None, 1]], type=pa.list_view(pa.int64()))
>>> print(nested_arr.type)
list_view<item: int64>ListView arrays have a different set of buffers than List arrays. The ListView array has both an offsets and sizes buffer, while a List array only has an offsets buffer. This allows for ListView arrays to specify out-of-order offsets:
>>> values = [1, 2, 3, 4, 5, 6]
>>> offsets = [4, 2, 0]
>>> sizes = [2, 2, 2]
>>> arr = pa.ListViewArray.from_arrays(offsets, sizes, values)
>>> arr
<pyarrow.lib.ListViewArray object at ...>
[
[
5,
6
],
[
3,
4
],
[
1,
2
]
]See the format specification for more details on :ref:`listview-layout`.
pyarrow.array is able to infer the schema of a struct type from arrays of
dictionaries:
>>> pa.array([{'x': 1, 'y': True}, {'z': 3.4, 'x': 4}])
<pyarrow.lib.StructArray object at ...>
-- is_valid: all not null
-- child 0 type: int64
[
1,
4
]
-- child 1 type: bool
[
true,
null
]
-- child 2 type: double
[
null,
3.4
]Struct arrays can be initialized from a sequence of Python dicts or tuples. For tuples, you must explicitly pass the type:
>>> ty = pa.struct([('x', pa.int8()),
... ('y', pa.bool_())])
>>> pa.array([{'x': 1, 'y': True}, {'x': 2, 'y': False}], type=ty)
<pyarrow.lib.StructArray object at ...>
-- is_valid: all not null
-- child 0 type: int8
[
1,
2
]
-- child 1 type: bool
[
true,
false
]
>>> pa.array([(3, True), (4, False)], type=ty)
<pyarrow.lib.StructArray object at ...>
-- is_valid: all not null
-- child 0 type: int8
[
3,
4
]
-- child 1 type: bool
[
true,
false
]When initializing a struct array, nulls are allowed both at the struct level and at the individual field level. If initializing from a sequence of Python dicts, a missing dict key is handled as a null value:
>>> pa.array([{'x': 1}, None, {'y': None}], type=ty)
<pyarrow.lib.StructArray object at ...>
-- is_valid:
[
true,
false,
true
]
-- child 0 type: int8
[
1,
0,
null
]
-- child 1 type: bool
[
null,
false,
null
]You can also construct a struct array from existing arrays for each of the struct's components. In this case, data storage will be shared with the individual arrays, and no copy is involved:
>>> xs = pa.array([5, 6, 7], type=pa.int16())
>>> ys = pa.array([False, True, True])
>>> arr = pa.StructArray.from_arrays((xs, ys), names=('x', 'y'))
>>> arr.type
StructType(struct<x: int16, y: bool>)
>>> arr
<pyarrow.lib.StructArray object at ...>
-- is_valid: all not null
-- child 0 type: int16
[
5,
6,
7
]
-- child 1 type: bool
[
false,
true,
true
]Map arrays can be constructed from lists of lists of tuples (key-item pairs), but only if the type is explicitly passed into :meth:`array`:
>>> data = [[('x', 1), ('y', 0)], [('a', 2), ('b', 45)]]
>>> ty = pa.map_(pa.string(), pa.int64())
>>> pa.array(data, type=ty)
<pyarrow.lib.MapArray object at ...>
[
keys:
[
"x",
"y"
]
values:
[
1,
0
],
keys:
[
"a",
"b"
]
values:
[
2,
45
]
]MapArrays can also be constructed from offset, key, and item arrays. Offsets represent the starting position of each map. Note that the :attr:`MapArray.keys` and :attr:`MapArray.items` properties give the flattened keys and items. To keep the keys and items associated to their row, use the :meth:`ListArray.from_arrays` constructor with the :attr:`MapArray.offsets` property.
>>> arr = pa.MapArray.from_arrays([0, 2, 3], ['x', 'y', 'z'], [4, 5, 6])
>>> arr.keys
<pyarrow.lib.StringArray object at ...>
[
"x",
"y",
"z"
]
>>> arr.items
<pyarrow.lib.Int64Array object at ...>
[
4,
5,
6
]
>>> pa.ListArray.from_arrays(arr.offsets, arr.keys)
<pyarrow.lib.ListArray object at ...>
[
[
"x",
"y"
],
[
"z"
]
]
>>> pa.ListArray.from_arrays(arr.offsets, arr.items)
<pyarrow.lib.ListArray object at ...>
[
[
4,
5
],
[
6
]
]The union type represents a nested array type where each value can be one (and only one) of a set of possible types. There are two possible storage types for union arrays: sparse and dense.
In a sparse union array, each of the child arrays has the same length
as the resulting union array. They are adjuncted with a int8 "types"
array that tells, for each value, from which child array it must be
selected:
>>> xs = pa.array([5, 6, 7])
>>> ys = pa.array([False, False, True])
>>> types = pa.array([0, 1, 1], type=pa.int8())
>>> union_arr = pa.UnionArray.from_sparse(types, [xs, ys])
>>> union_arr.type
SparseUnionType(sparse_union<0: int64=0, 1: bool=1>)
>>> union_arr
<pyarrow.lib.UnionArray object at ...>
-- is_valid: all not null
-- type_ids: [
0,
1,
1
]
-- child 0 type: int64
[
5,
6,
7
]
-- child 1 type: bool
[
false,
false,
true
]In a dense union array, you also pass, in addition to the int8 "types"
array, a int32 "offsets" array that tells, for each value, at
each offset in the selected child array it can be found:
>>> xs = pa.array([5, 6, 7])
>>> ys = pa.array([False, True])
>>> types = pa.array([0, 1, 1, 0, 0], type=pa.int8())
>>> offsets = pa.array([0, 0, 1, 1, 2], type=pa.int32())
>>> union_arr = pa.UnionArray.from_dense(types, offsets, [xs, ys])
>>> union_arr.type
DenseUnionType(dense_union<0: int64=0, 1: bool=1>)
>>> union_arr
<pyarrow.lib.UnionArray object at ...>
-- is_valid: all not null
-- type_ids: [
0,
1,
1,
0,
0
]
-- value_offsets: [
0,
0,
1,
1,
2
]
-- child 0 type: int64
[
5,
6,
7
]
-- child 1 type: bool
[
false,
true
]The Dictionary type in PyArrow is a special array type that is similar to a
factor in R or a pandas.Categorical. It enables one or more record batches
in a file or stream to transmit integer indices referencing a shared
dictionary containing the distinct values in the logical array. This is
particularly often used with strings to save memory and improve performance.
The way that dictionaries are handled in the Apache Arrow format and the way they appear in C++ and Python is slightly different. We define a special :class:`~.DictionaryArray` type with a corresponding dictionary type. Let's consider an example:
>>> indices = pa.array([0, 1, 0, 1, 2, 0, None, 2])
>>> dictionary = pa.array(['foo', 'bar', 'baz'])
>>>
>>> dict_array = pa.DictionaryArray.from_arrays(indices, dictionary)
>>> dict_array
<pyarrow.lib.DictionaryArray object at ...>
...
-- dictionary:
[
"foo",
"bar",
"baz"
]
-- indices:
[
0,
1,
0,
1,
2,
0,
null,
2
]Here we have:
>>> print(dict_array.type)
dictionary<values=string, indices=int64, ordered=0>
>>> dict_array.indices
<pyarrow.lib.Int64Array object at ...>
[
0,
1,
0,
1,
2,
0,
null,
2
]
>>> dict_array.dictionary
<pyarrow.lib.StringArray object at ...>
[
"foo",
"bar",
"baz"
]When using :class:`~.DictionaryArray` with pandas, the analogue is
pandas.Categorical (more on this later):
>>> dict_array.to_pandas()
0 foo
1 bar
2 foo
3 bar
4 baz
5 foo
6 NaN
7 baz
dtype: category
Categories (3, str): ['foo', 'bar', 'baz']A Record Batch in Apache Arrow is a collection of equal-length array instances. Let's consider a collection of arrays:
>>> data = [
... pa.array([1, 2, 3, 4]),
... pa.array(['foo', 'bar', 'baz', None]),
... pa.array([True, None, False, True])
... ]A record batch can be created from this list of arrays using
RecordBatch.from_arrays:
>>> batch = pa.RecordBatch.from_arrays(data, ['f0', 'f1', 'f2'])
>>> batch.num_columns
3
>>> batch.num_rows
4
>>> batch.schema
f0: int64
f1: string
f2: bool
>>>
>>> batch[1]
<pyarrow.lib.StringArray object at ...>
[
"foo",
"bar",
"baz",
null
]A record batch can be sliced without copying memory like an array:
>>> batch2 = batch.slice(1, 3)
>>> batch2[1]
<pyarrow.lib.StringArray object at ...>
[
"bar",
"baz",
null
]The PyArrow :class:`~.Table` type is not part of the Apache Arrow specification, but is rather a tool to help with wrangling multiple record batches and array pieces as a single logical dataset. As a relevant example, we may receive multiple small record batches in a socket stream, then need to concatenate them into contiguous memory for use in NumPy or pandas. The Table object makes this efficient without requiring additional memory copying.
Considering the record batch we created above, we can create a Table containing
one or more copies of the batch using Table.from_batches:
>>> batches = [batch] * 5
>>> table = pa.Table.from_batches(batches)
>>> table
pyarrow.Table
f0: int64
f1: string
f2: bool
----
f0: [[1,2,3,4],[1,2,3,4],...,[1,2,3,4],[1,2,3,4]]
f1: [["foo","bar","baz",null],...,["foo","bar","baz",null]]
f2: [[true,null,false,true],...,[true,null,false,true]]
>>> table.num_rows
20The table's columns are instances of :class:`~.ChunkedArray`, which is a container for one or more arrays of the same type.
>>> c = table[0]
>>> c
<pyarrow.lib.ChunkedArray object at ...>
[
[
1,
2,
3,
4
],
...
[
1,
2,
3,
4
]
]
>>> c.num_chunks
5
>>> c.chunk(0)
<pyarrow.lib.Int64Array object at ...>
[
1,
2,
3,
4
]As you'll see in the :ref:`pandas section <pandas_interop>`, we can convert these objects to contiguous NumPy arrays for use in pandas:
>>> c.to_pandas()
0 1
1 2
2 3
3 4
4 1
5 2
6 3
7 4
8 1
9 2
10 3
11 4
12 1
13 2
14 3
15 4
16 1
17 2
18 3
19 4
Name: f0, dtype: int64Multiple tables can also be concatenated together to form a single table using
pyarrow.concat_tables, if the schemas are equal:
>>> tables = [table] * 2
>>> table_all = pa.concat_tables(tables)
>>> table_all.num_rows
40
>>> c = table_all[0]
>>> c.num_chunks
10This is similar to Table.from_batches, but uses tables as input instead of
record batches. Record batches can be made into tables, but not the other way
around, so if your data is already in table form, then use
pyarrow.concat_tables.
Arrow supports both schema-level and field-level custom key-value metadata allowing for systems to insert their own application defined metadata to customize behavior.
Custom metadata can be accessed at :attr:`Schema.metadata` for the schema-level and :attr:`Field.metadata` for the field-level.
Note that this metadata is preserved in :ref:`ipc` processes.
To customize the schema metadata of an existing table you can use :meth:`Table.replace_schema_metadata`:
>>> table.schema.metadata
>>> table = table.replace_schema_metadata({"f0": "First dose"})
>>> table.schema.metadata
{b'f0': b'First dose'}To customize the metadata of the field from the table schema you can use :meth:`Field.with_metadata`:
>>> field_f1 = table.schema.field("f1")
>>> field_f1.metadata
>>> field_f1 = field_f1.with_metadata({"f1": "Second dose"})
>>> field_f1.metadata
{b'f1': b'Second dose'}Both options create a shallow copy of the data and do not in fact change the Schema which is immutable. To change the metadata in the schema of the table we created a new object when calling :meth:`Table.replace_schema_metadata`.
To change the metadata of the field in the schema we would need to define a new schema and cast the data to this schema:
>>> my_schema2 = pa.schema([
... pa.field('f0', pa.int64(), metadata={"name": "First dose"}),
... pa.field('f1', pa.string(), metadata={"name": "Second dose"}),
... pa.field('f2', pa.bool_())],
... metadata={"f2": "booster"})
>>> t2 = table.cast(my_schema2)
>>> t2.schema.field("f0").metadata
{b'name': b'First dose'}
>>> t2.schema.field("f1").metadata
{b'name': b'Second dose'}
>>> t2.schema.metadata
{b'f2': b'booster'}Metadata key and value pairs are std::string objects in the C++ implementation
and so they are bytes objects (b'...') in Python.
Many functions in PyArrow either return or take as an argument a :class:`RecordBatchReader`. It can be used like any iterable of record batches, but also provides their common schema without having to get any of the batches.
>>> schema = pa.schema([('x', pa.int64())])
>>>
>>> def iter_record_batches():
... for i in range(2):
... yield pa.RecordBatch.from_arrays([pa.array([1, 2, 3])], schema=schema)
>>>
>>> reader = pa.RecordBatchReader.from_batches(schema, iter_record_batches())
>>> print(reader.schema)
x: int64
>>> for batch in reader:
... print(batch)
pyarrow.RecordBatch
x: int64
----
x: [1,2,3]
pyarrow.RecordBatch
x: int64
----
x: [1,2,3]It can also be sent between languages using the :ref:`C stream interface <c-stream-interface>`.
Each array of the RecordBatch has it's own contiguous memory that is not necessarily
adjacent to other arrays. A different memory structure that is used in machine learning
libraries is a two dimensional array (also called a 2-dim tensor or a matrix) which takes
only one contiguous block of memory.
For this reason there is a function pyarrow.RecordBatch.to_tensor() available
to efficiently convert tabular columnar data into a tensor.
Data types supported in this conversion are unsigned, signed integer and float types. Currently only column-major conversion is supported.
>>> arr1 = [1, 2, 3, 4, 5]
>>> arr2 = [10, 20, 30, 40, 50]
>>> batch = pa.RecordBatch.from_arrays(
... [
... pa.array(arr1, type=pa.uint16()),
... pa.array(arr2, type=pa.int16()),
... ], ["a", "b"]
... )
>>> batch.to_tensor()
<pyarrow.Tensor>
type: int32
shape: (5, 2)
strides: (8, 4)
>>> batch.to_tensor().to_numpy()
array([[ 1, 10],
[ 2, 20],
[ 3, 30],
[ 4, 40],
[ 5, 50]], dtype=int32)With null_to_nan set to True one can also convert data with
nulls. They will be converted to NaN:
>>> batch = pa.record_batch(
... [
... pa.array([1, 2, 3, 4, None], type=pa.int32()),
... pa.array([10, 20, 30, 40, None], type=pa.float32()),
... ], names = ["a", "b"]
... )
>>> batch.to_tensor(null_to_nan=True).to_numpy()
array([[ 1., 10.],
[ 2., 20.],
[ 3., 30.],
[ 4., 40.],
[nan, nan]])