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README.md

Microsoft Research Cambridge InnerEyeDeepLearning for Medical Image Analysis

Consuming the InnerEye package

  • You need to have a Conda installation on your machine.
  • Create a Conda environment file environment.yml in your source code with this contents:
name: MyEnv
channels:
  - defaults
  - pytorch
dependencies:
  - pip=20.0.2
  - python=3.7.3
  - pytorch=1.3.0
  - pip:
      - git+https://github.com/analysiscenter/radio.git@6d53e25#egg=radio
      - git+https://github.com/ptrblck/apex.git@4ad9b3b#egg=apex
      - innereye
  • Create a conda environment: conda env create --file environment.yml
  • Activate the environment: conda activate MyEnv