Issues

• Text before the first '>' header becomes an extra transcript with predicted ORFs

  TransDecoder/TransDecoder#213 · Filter by author adamjohnwright opened on Oct 20, 2026
  3

• TransDecoder.Predict writes the ORFs of a transcript in a different order on each run

  TransDecoder/TransDecoder#212 · Filter by author titodamiani opened on Oct 16, 2026
  1

• Feature request: Multi-thread support for --pfam-search-db

  TransDecoder/TransDecoder#211 · Filter by author WWz33 opened on Jul 12, 2026

• old wiki page

  TransDecoder/TransDecoder#209 · Filter by author junjiemama opened on Jun 15, 2026
  1

• Binaries missing with conda install

  TransDecoder/TransDecoder#208 · Filter by author fgvieira opened on Apr 7, 2026
  10

• Error during Transdecoder.Predict

  TransDecoder/TransDecoder#207 · Filter by author desmodus1984 opened on Mar 3, 2026
  3

• Error, no sequence for chr1 at /wcr/TransDecoder/util/gff3_file_to_proteins.pl line 82.

  TransDecoder/TransDecoder#206 · Filter by author coderboyQ opened on Jul 27, 2025
  1

• the new release 5.7.1.

  TransDecoder/TransDecoder#205 · Filter by author abdo3a opened on Jul 18, 2025

• Transdecoder.Predict breaks on particular seuqences?

  TransDecoder/TransDecoder#204 · Filter by author kolecko007 opened on Jan 17, 2025

• Empty file generation when i use cdna_alignment_orf_to_genome_orf.pl

  TransDecoder/TransDecoder#203 · Filter by author Wrennut opened on Nov 30, 2024

• Question about TransDecoder ORF score

  TransDecoder/TransDecoder#201 · Filter by author titodamiani opened on Apr 4, 2024
  3

• TransDecoder.Predict 中的错误

  TransDecoder/TransDecoder#200 · Filter by author Qhz-Sirius opened on Mar 30, 2024
  2

• Error running TransDecoder.Predict

  TransDecoder/TransDecoder#199 · Filter by author komorn opened on Mar 22, 2024

• Questions about protein data support

  TransDecoder/TransDecoder#198 · Filter by author Tang-pro opened on Mar 16, 2024
  10

• Feature issue in a record after cdna_alignment_orf_to_genome_orf.pl

  TransDecoder/TransDecoder#196 · Filter by author SalvadorGJ opened on Feb 21, 2024
  4

• result file

  TransDecoder/TransDecoder#194 · Filter by author Wanjie-Feng opened on Jan 21, 2024
  2

• Empty file generation

  TransDecoder/TransDecoder#193 · Filter by author kittyBS opened on Jan 16, 2024
  2

• Runninf TransDecoder at a higher -m paremeter

  TransDecoder/TransDecoder#191 · Filter by author mollylRivers opened on Nov 16, 2023
  7

• Inaccurate orf length in gff3 file

  TransDecoder/TransDecoder#190 · Filter by author mollylRivers opened on Nov 1, 2023
  6

• TransDecoder.Predict error

  TransDecoder/TransDecoder#188 · Filter by author Franck-Dumetz opened on Oct 23, 2023
  3

• Two Nuc_translator.pm modules

  TransDecoder/TransDecoder#185 · Filter by author atengertrolander opened on Sep 21, 2023
  4

• Transdecoder Docker doesnt work

  TransDecoder/TransDecoder#182 · Filter by author yannic-chen opened on Sep 6, 2023
  1

• cdna_alignment_orf_to_genome_orf.pl

  TransDecoder/TransDecoder#181 · Filter by author isnmn opened on Aug 30, 2023
  2

• Error for Gencode gtf

  TransDecoder/TransDecoder#180 · Filter by author taigalokhid opened on Aug 22, 2023
  3

• Transdecoder and transl_table=4

  TransDecoder/TransDecoder#179 · Filter by author frsepulveda opened on Aug 22, 2023
  3