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1. Commits on Oct 13, 2017

   • additional validation of called orfs, looking for in-frame stops

     brianjohnhaas

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2. Commits on Oct 12, 2017

   • update

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   • added supertranscripts

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   • add

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   • add

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   • removed cufflinks from names

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3. Commits on Sep 8, 2017

   • included support for gmap-aligned transcripts

     brianjohnhaas

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4. Commits on Jul 29, 2017

   • updated tests

     brianjohnhaas

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5. Commits on Jul 8, 2017

   • improved resume mode

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6. Commits on Apr 21, 2017

   • include stringtie example

     brianjohnhaas

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   • add stringtie example

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7. Commits on Apr 26, 2016

   • autotesting

     brianjohnhaas

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   • adding autorun

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   • update, improved reporting

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   • prioritize according to model len not gene len

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   • use pfam and blast by default in example

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   • adding precomputed blast and pfam here

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   • additional reporting of kept cats

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   • include pasa gene-to-trans mapping

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   • updating pasa assembly test

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   • include phasing info, allow for single best orf

     brianjohnhaas

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8. Commits on Apr 23, 2016

   • Make the sample data reproducible

     Show description for 6d72091
     mr-c

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9. Commits on Feb 10, 2016

   • add

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   • add

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   • add

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   • update

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   • add

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10. Commits on Jan 26, 2015

    • update

      brianjohnhaas

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    • bugfix to recently introduced bug - count models and transcripts separately now

      brianjohnhaas

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    • update to new format

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    • update

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    • add

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11. Commits on Jan 25, 2015

    • rm

      brianjohnhaas

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    • add, initial code revision... still requires fine-tuning to make it work now

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