Repository navigation
Expand file tree
/
Copy pathSerializerPojo.java
More file actions
711 lines (577 loc) · 24.7 KB
/
Copy pathSerializerPojo.java
File metadata and controls
711 lines (577 loc) · 24.7 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
/*
* Copyright (c) 2012 Jan Kotek
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package org.mapdb;
import java.io.*;
import java.lang.reflect.Constructor;
import java.lang.reflect.Field;
import java.lang.reflect.InvocationTargetException;
import java.lang.reflect.Method;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.concurrent.ConcurrentHashMap;
import java.util.concurrent.CopyOnWriteArrayList;
import java.util.concurrent.locks.ReentrantReadWriteLock;
/**
* Serializer which handles POJO, object graphs etc.
*
* @author Jan Kotek
*/
public class SerializerPojo extends SerializerBase implements Serializable{
protected static final Serializer<CopyOnWriteArrayList<ClassInfo>> serializer = new Serializer<CopyOnWriteArrayList<ClassInfo>>() {
@Override
public void serialize(DataOutput out, CopyOnWriteArrayList<ClassInfo> obj) throws IOException {
DataOutput2.packInt(out, obj.size());
for (ClassInfo ci : obj) {
out.writeUTF(ci.name);
out.writeBoolean(ci.isEnum);
out.writeBoolean(ci.useObjectStream);
if(ci.useObjectStream) continue; //no fields
DataOutput2.packInt(out, ci.fields.size());
for (FieldInfo fi : ci.fields) {
out.writeUTF(fi.name);
out.writeBoolean(fi.primitive);
out.writeUTF(fi.type);
}
}
}
@Override
public CopyOnWriteArrayList<ClassInfo> deserialize(DataInput in, int available) throws IOException{
if(available==0) return new CopyOnWriteArrayList<ClassInfo>();
int size = DataInput2.unpackInt(in);
ArrayList<ClassInfo> ret = new ArrayList<ClassInfo>(size);
for (int i = 0; i < size; i++) {
String className = in.readUTF();
boolean isEnum = in.readBoolean();
boolean isExternalizable = in.readBoolean();
int fieldsNum = isExternalizable? 0 : DataInput2.unpackInt(in);
FieldInfo[] fields = new FieldInfo[fieldsNum];
for (int j = 0; j < fieldsNum; j++) {
fields[j] = new FieldInfo(in.readUTF(), in.readBoolean(), in.readUTF(), classForName(className));
}
ret.add(new ClassInfo(className, fields,isEnum,isExternalizable));
}
return new CopyOnWriteArrayList<ClassInfo>(ret);
}
@Override
public int fixedSize() {
return -1;
}
};
private static final long serialVersionUID = 3181417366609199703L;
protected final ReentrantReadWriteLock lock = new ReentrantReadWriteLock(CC.FAIR_LOCKS);
protected static Class<?> classForName(String className) {
try {
final ClassLoader loader = Thread.currentThread().getContextClassLoader();
return Class.forName(className, true,loader);
} catch (ClassNotFoundException e) {
throw new RuntimeException(e);
}
}
protected DB db;
public SerializerPojo(CopyOnWriteArrayList<ClassInfo> registered){
if(registered == null)
registered = new CopyOnWriteArrayList<ClassInfo>();
this.registered = registered;
oldSize = registered.size();
for(int i=0;i<registered.size();i++)
{
ClassInfo ci = registered.get(i);
Class clazz = classForName(ci.name);
class2classId.put(clazz, i);
classId2class.put(i, clazz);
}
}
protected void setDb(DB db) {
this.db = db;
}
/**
* Stores info about single class stored in MapDB.
* Roughly corresponds to 'java.io.ObjectStreamClass'
*/
protected static final class ClassInfo {
protected final String name;
protected final List<FieldInfo> fields = new ArrayList<FieldInfo>();
protected final Map<String, FieldInfo> name2fieldInfo = new HashMap<String, FieldInfo>();
protected final Map<String, Integer> name2fieldId = new HashMap<String, Integer>();
protected ObjectStreamField[] objectStreamFields;
protected final boolean isEnum;
protected final boolean useObjectStream;
public ClassInfo(final String name, final FieldInfo[] fields, final boolean isEnum, final boolean isExternalizable) {
this.name = name;
this.isEnum = isEnum;
this.useObjectStream = isExternalizable;
for (FieldInfo f : fields) {
this.name2fieldId.put(f.name, this.fields.size());
this.fields.add(f);
this.name2fieldInfo.put(f.name, f);
}
}
public int getFieldId(String name) {
Integer fieldId = name2fieldId.get(name);
if(fieldId != null)
return fieldId;
return -1;
}
public int addFieldInfo(FieldInfo field) {
name2fieldId.put(field.name, fields.size());
name2fieldInfo.put(field.name, field);
fields.add(field);
return fields.size() - 1;
}
public ObjectStreamField[] getObjectStreamFields() {
return objectStreamFields;
}
public void setObjectStreamFields(ObjectStreamField[] objectStreamFields) {
this.objectStreamFields = objectStreamFields;
}
@Override public String toString(){
return super.toString()+ "["+name+"]";
}
}
/**
* Stores info about single field stored in MapDB.
* Roughly corresponds to 'java.io.ObjectFieldClass'
*/
protected static class FieldInfo {
protected final String name;
protected final boolean primitive;
protected final String type;
protected Class<?> typeClass;
// Class containing this field
protected final Class<?> clazz;
protected Field field;
public FieldInfo(String name, boolean primitive, String type, Class<?> clazz) {
this.name = name;
this.primitive = primitive;
this.type = type;
this.clazz = clazz;
this.typeClass = primitive?null:classForName(type);
//init field
Class<?> aClazz = clazz;
// iterate over class hierarchy, until root class
while (true) {
if(aClazz == Object.class) throw new RuntimeException("Could not set field value: "+name+" - "+clazz.toString());
// access field directly
try {
Field f = aClazz.getDeclaredField(name);
// security manager may not be happy about this
if (!f.isAccessible())
f.setAccessible(true);
field = f;
break;
} catch (NoSuchFieldException e) {
//field does not exists
}
// move to superclass
aClazz = aClazz.getSuperclass();
}
}
public FieldInfo(ObjectStreamField sf, Class<?> clazz) {
this(sf.getName(), sf.isPrimitive(), sf.getType().getName(), clazz);
}
}
protected CopyOnWriteArrayList<ClassInfo> registered;
protected Map<Class<?>, Integer> class2classId = new HashMap<Class<?>, Integer>();
protected Map<Integer, Class<?>> classId2class = new HashMap<Integer, Class<?>>();
public void registerClass(Class<?> clazz) throws IOException {
if(clazz != Object.class)
assertClassSerializable(clazz);
if (containsClass(clazz))
return;
assert(lock.isWriteLockedByCurrentThread());
final boolean advancedSer = usesAdvancedSerialization(clazz);
ObjectStreamField[] streamFields = advancedSer? new ObjectStreamField[0]:getFields(clazz);
FieldInfo[] fields = new FieldInfo[streamFields.length];
for (int i = 0; i < fields.length; i++) {
ObjectStreamField sf = streamFields[i];
fields[i] = new FieldInfo(sf, clazz);
}
ClassInfo i = new ClassInfo(clazz.getName(), fields,clazz.isEnum(), advancedSer);
class2classId.put(clazz, registered.size());
classId2class.put(registered.size(), clazz);
registered.add(i);
saveClassInfo();
}
protected boolean usesAdvancedSerialization(Class<?> clazz) {
if(Externalizable.class.isAssignableFrom(clazz)) return true;
try {
if(clazz.getDeclaredMethod("readObject",ObjectInputStream.class)!=null) return true;
} catch (NoSuchMethodException e) {
}
try {
if(clazz.getDeclaredMethod("writeObject",ObjectOutputStream.class)!=null) return true;
} catch (NoSuchMethodException e) {
}
try {
if(clazz.getDeclaredMethod("writeReplace")!=null) return true;
} catch (NoSuchMethodException e) {
}
return false;
}
/** action performed after classInfo was modified, feel free to override */
protected void saveClassInfo() {
}
protected ObjectStreamField[] getFields(Class<?> clazz) {
ObjectStreamField[] fields = null;
ClassInfo classInfo = null;
Integer classId = class2classId.get(clazz);
if (classId != null) {
classInfo = registered.get(classId);
fields = classInfo.getObjectStreamFields();
}
if (fields == null) {
ObjectStreamClass streamClass = ObjectStreamClass.lookup(clazz);
FastArrayList<ObjectStreamField> fieldsList = new FastArrayList<ObjectStreamField>();
while (streamClass != null) {
for (ObjectStreamField f : streamClass.getFields()) {
fieldsList.add(f);
}
clazz = clazz.getSuperclass();
streamClass = ObjectStreamClass.lookup(clazz);
}
fields = new ObjectStreamField[fieldsList
.size];
System.arraycopy(fieldsList.data, 0, fields, 0, fields.length);
if(classInfo != null)
classInfo.setObjectStreamFields(fields);
}
return fields;
}
protected void assertClassSerializable(Class<?> clazz) throws NotSerializableException, InvalidClassException {
if(containsClass(clazz))
return;
if (!Serializable.class.isAssignableFrom(clazz))
throw new NotSerializableException(clazz.getName());
}
public Object getFieldValue(FieldInfo fieldInfo, Object object) {
if(fieldInfo.field==null){
throw new NoSuchFieldError(object.getClass() + "." + fieldInfo.name);
}
try {
return fieldInfo.field.get(object);
} catch (IllegalAccessException e) {
throw new RuntimeException("Could not get value from field", e);
}
}
public void setFieldValue(FieldInfo fieldInfo, Object object, Object value) {
if(fieldInfo.field==null)
throw new NoSuchFieldError(object.getClass() + "." + fieldInfo.name);
try{
fieldInfo.field.set(object, value);
} catch (IllegalAccessException e) {
throw new RuntimeException("Could not set field value: ",e);
}
}
public boolean containsClass(Class<?> clazz) {
return (class2classId.get(clazz) != null);
}
public int getClassId(Class<?> clazz) {
Integer classId = class2classId.get(clazz);
if(classId != null) {
return classId;
}
throw new AssertionError("Class is not registered: " + clazz);
}
@Override
protected Engine getEngine() {
return db.getEngine();
}
@Override
protected void serializeUnknownObject(DataOutput out, Object obj, FastArrayList<Object> objectStack) throws IOException {
if(db!=null){
//check for named objects
String name = db.getNameForObject(obj);
if(name!=null){
out.write(Header.NAMED);
out.writeUTF(name);
//TODO object stack here?
return;
}
}
out.write(Header.POJO);
lock.writeLock().lock(); //TODO write lock is not necessary over entire method
try{
Class<?> clazz = obj.getClass();
if( !clazz.isEnum() && clazz.getSuperclass()!=null && clazz.getSuperclass().isEnum())
clazz = clazz.getSuperclass();
registerClass(clazz);
//write class header
int classId = getClassId(clazz);
DataOutput2.packInt(out, classId);
ClassInfo classInfo = registered.get(classId);
if(classInfo.useObjectStream){
ObjectOutputStream2 out2 = new ObjectOutputStream2((OutputStream) out);
out2.writeObject(obj);
return;
}
if(classInfo.isEnum) {
int ordinal = ((Enum<?>)obj).ordinal();
DataOutput2.packInt(out, ordinal);
}
ObjectStreamField[] fields = getFields(clazz);
DataOutput2.packInt(out, fields.length);
for (ObjectStreamField f : fields) {
//write field ID
int fieldId = classInfo.getFieldId(f.getName());
if (fieldId == -1) {
//field does not exists in class definition stored in db,
//probably new field was added so add field descriptor
fieldId = classInfo.addFieldInfo(new FieldInfo(f, clazz));
saveClassInfo();
}
DataOutput2.packInt(out, fieldId);
//and write value
Object fieldValue = getFieldValue(classInfo.fields.get(fieldId), obj);
serialize(out, fieldValue, objectStack);
}
}finally{
lock.writeLock().unlock();
}
}
@Override
protected Object deserializeUnknownHeader(DataInput in, int head, FastArrayList<Object> objectStack) throws IOException {
if(head == Header.NAMED){
String name = in.readUTF();
Object o = db.get(name);
if(o==null) throw new AssertionError("Named object was not found: "+name);
objectStack.add(o);
return o;
}
if(head!= Header.POJO) throw new AssertionError();
lock.readLock().lock();
//read class header
try {
int classId = DataInput2.unpackInt(in);
ClassInfo classInfo = registered.get(classId);
Class<?> clazz = classId2class.get(classId);
if(clazz == null)
clazz = classForName(classInfo.name);
assertClassSerializable(clazz);
Object o;
if(classInfo.useObjectStream){
ObjectInputStream2 in2 = new ObjectInputStream2(in);
o = in2.readObject();
}else if(classInfo.isEnum) {
int ordinal = DataInput2.unpackInt(in);
o = clazz.getEnumConstants()[ordinal];
}
else{
o = createInstanceSkippinkConstructor(clazz);
}
objectStack.add(o);
if(!classInfo.useObjectStream){
int fieldCount = DataInput2.unpackInt(in);
for (int i = 0; i < fieldCount; i++) {
int fieldId = DataInput2.unpackInt(in);
FieldInfo f = classInfo.fields.get(fieldId);
Object fieldValue = deserialize(in, objectStack);
setFieldValue(f, o, fieldValue);
}
}
return o;
} catch (Exception e) {
throw new RuntimeException("Could not instantiate class", e);
}finally {
lock.readLock().unlock();
}
}
static protected Method sunConstructor = null;
static protected Object sunReflFac = null;
static protected Method androidConstructor = null;
static private Method androidConstructorGinger = null;
static private int constructorId;
static{
try{
Class clazz = classForName("sun.reflect.ReflectionFactory");
if(clazz!=null){
Method getReflectionFactory = clazz.getMethod("getReflectionFactory");
sunReflFac = getReflectionFactory.invoke(null);
sunConstructor = clazz.getMethod("newConstructorForSerialization",
java.lang.Class.class, java.lang.reflect.Constructor.class);
}
}catch(Exception e){
//ignore
}
if(sunConstructor == null)try{
//try android way
Method newInstance = ObjectInputStream.class.getDeclaredMethod("newInstance", Class.class, Class.class);
newInstance.setAccessible(true);
androidConstructor = newInstance;
}catch(Exception e){
//ignore
}
//this method was taken from
//http://dexmaker.googlecode.com/git-history/5a7820356e68a977711afc854d6cd71296c56391/src/mockito/java/com/google/dexmaker/mockito/UnsafeAllocator.java
//Copyright (C) 2012 The Android Open Source Project, licenced under Apache 2 license
if(sunConstructor == null && androidConstructor == null)try{
//try android post ginger way
Method getConstructorId = ObjectStreamClass.class.getDeclaredMethod("getConstructorId", Class.class);
getConstructorId.setAccessible(true);
constructorId = (Integer) getConstructorId.invoke(null, Object.class);
Method newInstance = ObjectStreamClass.class.getDeclaredMethod("newInstance", Class.class, int.class);
newInstance.setAccessible(true);
androidConstructorGinger = newInstance;
}catch(Exception e){
//ignore
}
}
protected static Map<Class<?>, Constructor<?>> class2constuctor = new ConcurrentHashMap<Class<?>, Constructor<?>>();
/**
* For pojo serialization we need to instantiate class without invoking its constructor.
* There are two ways to do it:
* <p/>
* Using proprietary API on Oracle JDK and OpenJDK
* sun.reflect.ReflectionFactory.getReflectionFactory().newConstructorForSerialization()
* more at http://www.javaspecialists.eu/archive/Issue175.html
* <p/>
* Using 'ObjectInputStream.newInstance' on Android
* http://stackoverflow.com/a/3448384
* <p/>
* If non of these works we fallback into usual reflection which requires an no-arg constructor
*/
@SuppressWarnings("restriction")
protected <T> T createInstanceSkippinkConstructor(Class<T> clazz)
throws NoSuchMethodException, InvocationTargetException, IllegalAccessException, InstantiationException {
if(sunConstructor !=null){
//Sun specific way
Constructor<?> intConstr = class2constuctor.get(clazz);
if (intConstr == null) {
Constructor<?> objDef = Object.class.getDeclaredConstructor();
intConstr = (Constructor<?>) sunConstructor.invoke(sunReflFac, clazz, objDef);
class2constuctor.put(clazz, intConstr);
}
return (T)intConstr.newInstance();
}else if(androidConstructor!=null){
//android (harmony) specific way
return (T)androidConstructor.invoke(null, clazz, Object.class);
}else if(androidConstructorGinger!=null){
//android (post ginger) specific way
return (T)androidConstructorGinger.invoke(null, clazz, constructorId);
}
else{
//try usual generic stuff which does not skip constructor
Constructor<?> c = class2constuctor.get(clazz);
if(c==null){
c =clazz.getConstructor();
if(!c.isAccessible()) c.setAccessible(true);
class2constuctor.put(clazz,c);
}
return (T)c.newInstance();
}
}
protected final class ObjectOutputStream2 extends ObjectOutputStream{
protected ObjectOutputStream2(OutputStream out) throws IOException, SecurityException {
super(out);
}
@Override
protected void writeClassDescriptor(ObjectStreamClass desc) throws IOException {
Integer classId = class2classId.get(desc.forClass());
if(classId ==null){
registerClass(desc.forClass());
classId = class2classId.get(desc.forClass());
}
DataOutput2.packInt(this,classId);
}
}
protected final class ObjectInputStream2 extends ObjectInputStream{
protected ObjectInputStream2(DataInput in) throws IOException, SecurityException {
super(new DataIO.DataInputToStream(in));
}
@Override
protected ObjectStreamClass readClassDescriptor() throws IOException, ClassNotFoundException {
Integer classId = DataInput2.unpackInt(this);
Class clazz = classId2class.get(classId);
return ObjectStreamClass.lookup(clazz);
}
@Override
protected Class<?> resolveClass(ObjectStreamClass desc) throws IOException, ClassNotFoundException {
ClassLoader loader = Thread.currentThread().getContextClassLoader();
Class clazz = Class.forName(desc.getName(), false, loader);
if (clazz != null)
return clazz;
return super.resolveClass(desc);
}
}
protected int oldSize;
public boolean hasUnsavedChanges(){
return oldSize!=registered.size();
}
public void save(Engine e){
//TODO thread safe?
e.update(Engine.CLASS_INFO_RECID, registered, SerializerPojo.serializer);
oldSize = registered.size();
}
protected CopyOnWriteArrayList<Fun.Function1> serializationTransformsSerialize;
protected CopyOnWriteArrayList<Fun.Function1> serializationTransformsDeserialize;
/**
* Add interceptor which may modify all deserialized/serialized objects
*
* @param beforeSerialization transform called on all object before they are serialized
* @param afterDeserialization transform called on all object after they are serialized
*/
public <A,R> void serializerTransformAdd(Fun.Function1<A,R> beforeSerialization, Fun.Function1<R,A> afterDeserialization ){
lock.writeLock().lock(); //TODO ensure thread safety
try {
if (serializationTransformsSerialize == null) {
serializationTransformsSerialize = new CopyOnWriteArrayList();
serializationTransformsDeserialize = new CopyOnWriteArrayList();
}
serializationTransformsSerialize.add(beforeSerialization);
serializationTransformsDeserialize.add(afterDeserialization);
}finally {
lock.writeLock().unlock();
}
}
/**
* Removes interceptor which may modify all deserialized/serialized objects
*
* @param beforeSerialization transform called on all object before they are serialized
* @param afterDeserialization transform called on all object after they are serialized
*/
public <A,R> void serializerTransformRemove(Fun.Function1<A,R> beforeSerialization, Fun.Function1<R,A> afterDeserialization ){
lock.writeLock().lock(); //TODO ensure thread safety
try {
if(serializationTransformsSerialize ==null){
return;
}
serializationTransformsSerialize.remove(beforeSerialization);
serializationTransformsDeserialize.remove(afterDeserialization);
}finally {
lock.writeLock().unlock();
}
}
@Override
public void serialize(DataOutput out, Object obj) throws IOException {
if(serializationTransformsSerialize!=null){
for(Fun.Function1 f:serializationTransformsSerialize){
obj = f.run(obj);
}
}
super.serialize(out,obj);
}
@Override
public Object deserialize(DataInput is, int capacity) throws IOException {
Object obj = super.deserialize(is, capacity);
if(serializationTransformsDeserialize!=null){
for(Fun.Function1 f:serializationTransformsDeserialize){
obj = f.run(obj);
}
}
return obj;
}
}