• The library is not ready. We aim at a beta release in the following months. If interested in a demo/early beta, please reach out to us.
• To get involved in the discussion you are welcome to join our Zulip workspace and/or our community meetings every second week; more info here.
• Links to the OME-NGFF specification: 0.4, 0.5-dev (tables), 0.5-dev (transformations and coordinate systems)

Please refer to the documentation. In particular:

• API documentation.
• Design doc.
• Example notebooks.

Check out the docs for more complete installation instructions. For now you can install spatialdata with:

pip install git+https://github.com/scverse/spatialdata.git@main

For questions and help requests, you can reach out in the scverse discourse. If you found a bug, please use the issue tracker.

t.b.a

You can cite the scverse publication as follows:

The scverse project provides a computational ecosystem for single-cell omics data analysis

Isaac Virshup, Danila Bredikhin, Lukas Heumos, Giovanni Palla, Gregor Sturm, Adam Gayoso, Ilia Kats, Mikaela Koutrouli, Scverse Community, Bonnie Berger, Dana Pe’er, Aviv Regev, Sarah A. Teichmann, Francesca Finotello, F. Alexander Wolf, Nir Yosef, Oliver Stegle & Fabian J. Theis

Nat Biotechnol. 2022 Apr 10. doi: 10.1038/s41587-023-01733-8.