• ../README.md Repository overview, quick start, checked-in profiles, and high-level pipeline summary for OpenNeuro ds007262 v1.0.6.
• pipeline_reference.md Stage-by-stage reference for the executable pipeline, config structure, and common run patterns.
• reproducibility.md Artifact policy, rerun behavior, and Linux-to-Windows handoff instructions for baseline outputs.
• ../analysis_pipeline/README.md Package-level map of the stage scripts and output layout.

If you keep manuscript-facing packets locally, place them under paper_handoff/. Those assets typically depend on local generated outputs and are not the primary entry point for reproducing the pipeline itself.

• archive/ Historical drafts and superseded documentation.
• figure_transfer_2026-03-01/ Local figure transfer bundle; not required to run the pipeline.