About the download of 2002 feature files #19

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1. Licko0909 commented on Feb 20, 2020

   

   Licko0909

   on Feb 20, 2020

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   874 file from here:
   https://egg2.wustl.edu/roadmap/data/byFileType/peaks/consolidated/narrowPeak/
2. jzthree commented on Feb 20, 2020

   

   jzthree

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   You can get the files from ENCODE project here http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeAwgDnaseUniform/ http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeAwgTfbsUniform/

   …

   On Thu, Feb 20, 2020 at 5:27 AM Licko0909 ***@***.***> wrote: 874 file from here: https://egg2.wustl.edu/roadmap/data/byFileType/peaks/consolidated/narrowPeak/ — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#19?email_source=notifications&email_token=AB7SOYZ54TAQXK2S3OZ4ADDRD2OPRA5CNFSM4KYRCMF2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEMOU37A#issuecomment-589123068>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AB7SOY4JADCPEEE622WJWVTRD2OPRANCNFSM4KYRCMFQ> .
3. Licko0909 commented on Feb 21, 2020

   

   Licko0909

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   Thank you very much, thank you for your reply! But， I already have 919 of deepsea's features, and the two links above are for blind deepsea's DHS and TF, a total of 814 narrow-peak files. My main confusion at the moment is that I can't find the other 1083 features used by expecto, except for Deepsea's 919 narrow-peak files (2002-919=1083). I really hope to get a reply again! | | 黄立超 | | [email protected] | 签名由网易邮箱大师定制 On 2/21/2020 03:36，Jian Zhou<[email protected]> wrote： You can get the files from ENCODE project here http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeAwgDnaseUniform/ http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeAwgTfbsUniform/

   On Thu, Feb 20, 2020 at 5:27 AM Licko0909 ***@***.***> wrote: 874 file from here: https://egg2.wustl.edu/roadmap/data/byFileType/peaks/consolidated/narrowPeak/ — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#19?email_source=notifications&email_token=AB7SOYZ54TAQXK2S3OZ4ADDRD2OPRA5CNFSM4KYRCMF2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEMOU37A#issuecomment-589123068>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AB7SOY4JADCPEEE622WJWVTRD2OPRANCNFSM4KYRCMFQ> .

   — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe.
4. jzthree commented on Feb 24, 2020

   

   jzthree

   on Feb 24, 2020

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   The full list of URL is also available here (https://static-content.springer.com/esm/art%3A10.1038%2Fs41588-019-0420-0/MediaObjects/41588_2019_420_MOESM9_ESM.xlsx). Even though some of the URLs are no longer valid as of now even though you should be able to find counterparts on roadmap epigenomics website.
5. Licko0909 commented on Feb 24, 2020

   

   Licko0909

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   Wow! That great! Thank you very much, thank you for your reply! ^_^!!!! | | 黄立超 | | [email protected] | 签名由网易邮箱大师定制 On 2/21/2020 21:10，黄立超<[email protected]> wrote： Thank you very much, thank you for your reply! But， I already have 919 of deepsea's features, and the two links above are for blind deepsea's DHS and TF, a total of 814 narrow-peak files. My main confusion at the moment is that I can't find the other 1083 features used by expecto, except for Deepsea's 919 narrow-peak files (2002-919=1083). I really hope to get a reply again! | | 黄立超 | | [email protected] | 签名由网易邮箱大师定制 On 2/21/2020 03:36，Jian Zhou<[email protected]> wrote： You can get the files from ENCODE project here http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeAwgDnaseUniform/ http://hgdownload.soe.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeAwgTfbsUniform/

   On Thu, Feb 20, 2020 at 5:27 AM Licko0909 ***@***.***> wrote: 874 file from here: https://egg2.wustl.edu/roadmap/data/byFileType/peaks/consolidated/narrowPeak/ — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#19?email_source=notifications&email_token=AB7SOYZ54TAQXK2S3OZ4ADDRD2OPRA5CNFSM4KYRCMF2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEMOU37A#issuecomment-589123068>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AB7SOY4JADCPEEE622WJWVTRD2OPRANCNFSM4KYRCMFQ> .

   — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe.
6. Licko0909 commented on Feb 24, 2020

   

   Licko0909

   on Feb 24, 2020 via email

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   I have found this supplementary data, but the link is invalid;I tried to download this data by other means last week, but I could not verify the correctness | | 黄立超 | | [email protected] | 签名由网易邮箱大师定制 On 2/24/2020 08:23，Jian Zhou<[email protected]> wrote： The full list of URL is also available here (https://static-content.springer.com/esm/art%3A10.1038%2Fs41588-019-0420-0/MediaObjects/41588_2019_420_MOESM9_ESM.xlsx). Even though some of the URLs are no longer valid as of now even though you should be able to find counterparts on roadmap epigenomics website. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe.