Skip to content
Navigation Menu
Sign in
Appearance settings
Platform
AI CODE CREATION
GitHub Copilot
Write better code with AI
GitHub Copilot app
Direct agents from issue to merge
MCP Registry
Integrate external tools
DEVELOPER WORKFLOWS
Actions
Automate any workflow
Codespaces
Instant dev environments
Issues
Plan and track work
Code Review
Manage code changes
Code Quality
Enforce quality at merge
APPLICATION SECURITY
GitHub Advanced Security
Find and fix vulnerabilities
Code security
Secure your code as you build
Secret protection
Stop leaks before they start
EXPLORE
Why GitHub
Documentation
Blog
Changelog
Marketplace
View all features
Solutions
BY COMPANY SIZE
Enterprises
Small and medium teams
Startups
Nonprofits
BY USE CASE
App Modernization
DevSecOps
DevOps
CI/CD
View all use cases
BY INDUSTRY
Healthcare
Financial services
Manufacturing
Government
View all industries
View all solutions
Resources
EXPLORE BY TOPIC
AI
Software Development
DevOps
Security
View all topics
EXPLORE BY TYPE
Customer stories
Events & webinars
Ebooks & reports
Business insights
GitHub Skills
SUPPORT & SERVICES
Documentation
Customer support
Community forum
Trust center
Partners
View all resources
Open Source
COMMUNITY
GitHub Sponsors
Fund open source developers
PROGRAMS
Security Lab
Maintainer Community
Accelerator
GitHub Stars
Archive Program
REPOSITORIES
Topics
Trending
Collections
Enterprise
ENTERPRISE SOLUTIONS
Enterprise platform
AI-powered developer platform
AVAILABLE ADD-ONS
GitHub Advanced Security
Enterprise-grade security features
Copilot for Business
Enterprise-grade AI features
Premium Support
Enterprise-grade 24/7 support
Pricing
Type
/
to search
Sign in
Sign up
Appearance settings
You signed in with another tab or window.
Reload
to refresh your session.
You signed out in another tab or window.
Reload
to refresh your session.
You switched accounts on another tab or window.
Reload
to refresh your session.
Dismiss alert
{{ message }}
Uh oh!
There was an error while loading.
Please reload this page
.
BiocPy
/
SpatialExperiment
Public
Notifications
You must be signed in to change notification settings
Fork
0
Star
3
Code
Issues
14
Pull requests
2
Actions
Projects
Security and quality
0
Insights
Additional navigation options
Code
Issues
Pull requests
Actions
Projects
Security and quality
Insights
Commits
Branch selector
main
User selector
All users
All time
Commit history
Commits on May 16, 2026
Bump min python version for tests in gh actions (#63)
jkanche
authored
9bf72ef
View commit details
Copy full SHA for 9bf72ef
Browse repository at this point
Commits on May 6, 2026
Update documentation URL in setup.cfg (#62)
jkanche
authored
7c4a456
View commit details
Copy full SHA for 7c4a456
Browse repository at this point
Commits on Mar 16, 2026
[pre-commit.ci] pre-commit autoupdate (#58)
Show description for 5508d90
pre-commit-ci[bot]
authored
5508d90
View commit details
Copy full SHA for 5508d90
Browse repository at this point
Commits on Jan 4, 2026
Changes to adapt to SCE (#59)
jkanche
authored
24aeea5
View commit details
Copy full SHA for 24aeea5
Browse repository at this point
Commits on Nov 17, 2025
[pre-commit.ci] pre-commit autoupdate (#57)
Show description for 842c41e
pre-commit-ci[bot]
authored
842c41e
View commit details
Copy full SHA for 842c41e
Browse repository at this point
Commits on Aug 23, 2025
[pre-commit.ci] pre-commit autoupdate (#56)
Show description for fe09a88
pre-commit-ci[bot]
authored
fe09a88
View commit details
Copy full SHA for fe09a88
Browse repository at this point
Commits on Jun 30, 2025
[pre-commit.ci] pre-commit autoupdate (#49)
Show description for 2f9a260
pre-commit-ci[bot]
authored
2f9a260
View commit details
Copy full SHA for 2f9a260
Browse repository at this point
Commits on May 16, 2025
Add details to `to_anndata()` docstring (#55)
keviny2
authored
7e2fead
View commit details
Copy full SHA for 7e2fead
Browse repository at this point
Commits on May 15, 2025
Make check for empty bframe more robust (#54)
keviny2
authored
6941b0e
View commit details
Copy full SHA for 6941b0e
Browse repository at this point
Only populate obsm if spatial coordinates exist (#53)
keviny2
authored
182c915
View commit details
Copy full SHA for 182c915
Browse repository at this point
Commits on May 12, 2025
Change to image handling for consistency (#51)
Show description for 414ec77
jkanche
authored
414ec77
View commit details
Copy full SHA for 414ec77
Browse repository at this point
Commits on May 7, 2025
Implement to_anndata() (#50)
keviny2
authored
9286eb7
View commit details
Copy full SHA for 9286eb7
Browse repository at this point
Commits on Apr 25, 2025
Make module names all lowercase (#48)
keviny2
authored
0e099fd
View commit details
Copy full SHA for 0e099fd
Browse repository at this point
Commits on Apr 24, 2025
Set the expected column names for image data slot (#46)
jkanche
authored
d704627
View commit details
Copy full SHA for d704627
Browse repository at this point
Commits on Apr 22, 2025
[pre-commit.ci] pre-commit autoupdate (#37)
Show description for 8a4bbb5
pre-commit-ci[bot]
authored
8a4bbb5
View commit details
Copy full SHA for 8a4bbb5
Browse repository at this point
Commits on Apr 11, 2025
Implement `img_raster` in `SpatialExperiment` class (#41)
keviny2
authored
b1254e4
View commit details
Copy full SHA for b1254e4
Browse repository at this point
Commits on Apr 4, 2025
Implement img_source() (#36)
keviny2
authored
d9fb079
View commit details
Copy full SHA for d9fb079
Browse repository at this point
Commits on Apr 2, 2025
Enhance tests for image data methods (#38)
keviny2
authored
08baac1
View commit details
Copy full SHA for 08baac1
Browse repository at this point
Commits on Apr 1, 2025
Remove image(s) from SPE (#34)
Show description for 780f39e
keviny2
authored
780f39e
View commit details
Copy full SHA for 780f39e
Browse repository at this point
Commits on Mar 19, 2025
Refactor retrieve_rows_by_id to get_img_idx (#33)
keviny2
authored
7b50196
View commit details
Copy full SHA for 7b50196
Browse repository at this point
Commits on Mar 3, 2025
Disambiguate get_img_data between _imgutils.py and SpatialExperiment.py (#31)
keviny2
authored
bd2078c
View commit details
Copy full SHA for bd2078c
Browse repository at this point
Commits on Mar 1, 2025
Move `SpatialFeatureExperiment` into its own package (#30)
jkanche
authored
fc795cc
View commit details
Copy full SHA for fc795cc
Browse repository at this point
Commits on Feb 28, 2025
Load visium as SPE (#16)
Show description for 10e93d5
keviny2
authored
10e93d5
View commit details
Copy full SHA for 10e93d5
Browse repository at this point
Commits on Feb 26, 2025
Merge pull request #23 from BiocPy/combine-ops
Show description for 5cbc514
keviny2
authored
5cbc514
View commit details
Copy full SHA for 5cbc514
Browse repository at this point
Update CHANGELOG
keviny2
committed
9520b7f
View commit details
Copy full SHA for 9520b7f
Browse repository at this point
Make type hints compatable with python<=3.10
keviny2
committed
017feb7
View commit details
Copy full SHA for 017feb7
Browse repository at this point
Test relaxed combine columns
keviny2
committed
4a625ad
View commit details
Copy full SHA for 4a625ad
Browse repository at this point
Handle relaxed combine columns
keviny2
committed
3d54703
View commit details
Copy full SHA for 3d54703
Browse repository at this point
Commits on Feb 25, 2025
Lint
keviny2
committed
b463d71
View commit details
Copy full SHA for b463d71
Browse repository at this point
All combine columns tests pass
keviny2
committed
0c650db
View commit details
Copy full SHA for 0c650db
Browse repository at this point
WIP: Add test for checking that img_data combined correctly
keviny2
committed
e7566ca
View commit details
Copy full SHA for e7566ca
Browse repository at this point
Add row_names and column_names to test spe
keviny2
committed
76b0d65
View commit details
Copy full SHA for 76b0d65
Browse repository at this point
Add test for duplicate sample ids for combine ops
keviny2
committed
108ba1f
View commit details
Copy full SHA for 108ba1f
Browse repository at this point
Make deepcopy of coldata
keviny2
committed
54030ec
View commit details
Copy full SHA for 54030ec
Browse repository at this point
Begin implementing combine_columns
keviny2
committed
745cd06
View commit details
Copy full SHA for 745cd06
Browse repository at this point
Previous
Next
You can’t perform that action at this time.