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BiocPy
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Commits on Dec 13, 2025
Updated GHA workflows, switched to trusted publishing.
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Centralize the choice of a default buffer size for apply.
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Commits on May 7, 2025
Updated CHANGELOG.
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Support single-integer slicing of DelayedArrays, SparseNdarrays.
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Commits on Dec 20, 2024
Silence NumPy warnings about numerical operations with zero.
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Commits on Dec 19, 2024
Collapse repeated operations to remove unnecessary delayed layers. (#66)
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Commits on Dec 18, 2024
chore: remove Python 3.8 support (#65)
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Commits on Dec 6, 2024
Backfilled the changelog with all of our changes.
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Avoid cast to float when operating on uint64 indices in a SparseNdarray.
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Coerce numpy.generic instances to dtypes in SparseNdarray constructor.
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Commits on Oct 23, 2024
Support dtype= and copy= arguments in __array__(), as required by numpy 2. (#64)
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Added getters for the RegularTick properties, for convenience.
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Commits on May 24, 2024
Add support for more numpy functions to dense and sparse `DelayedArrays` (#62)
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Commits on Feb 1, 2024
Exported the converter from chunk shape to a SimpleGrid.
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Protect against out-of-range negative indices for RegularTicks.
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Tidied up the docstrings.
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Cleaned up the internal subsetting utilities.
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Switch to Grid classes to control how iteration is performed. (#61)
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Commits on Jan 30, 2024
Added buffer_size= option to apply_over_* functions for convenience.
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Renamed the SciPy conversion functions and made them generics.
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Converted the to_*_array() functions into generics.
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Handle zero-extent arrays during apply_over_* functions.
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Do not sanitize no-op masks on ndarrays during test assertions.
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Testfix for the ndarray assertions.
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Use block processing to compute basic statistics from a DelayedArray. (#59)
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Bugfix for NaN-safe equality checks in tests.
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Commits on Jan 29, 2024
Added basic statistics (mean/sum/var) for SparseNdarrays.
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Added a copy method for SparseNdarrays.
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Tidied up the README and other docs.
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Provide converters from SparseNdarrays to SciPy sparse matrices.
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Do not require Fortran storage order from extract_dense_array.
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Subset is now mandatory in extract_*_array calls.
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Require all arrays to explicitly set an is_masked method.
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Minor testfix for masked value comparison.
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Commits on Jan 28, 2024
Bugfix to respect changes in index dtype upon SparseNdarray concatenation.
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