Commits

Branch selector

 master

User selector

All users

All time

Commit history

Commits on Mar 13, 2019

• fix bug in reading single decoy rep*tra* file

  

  Chengxin Zhang

  committed
  00377fa

  Copy full SHA for 00377fa

• uniprot api

  

  Chengxin Zhang

  committed
  e6263e2

  Copy full SHA for e6263e2

Commits on Mar 12, 2019

• read real distance map

  

  Chengxin Zhang

  committed
  dab1866

  Copy full SHA for dab1866

Commits on Mar 11, 2019

• distance_pdb

  

  Zhang

  committed
  25165fe

  Copy full SHA for 25165fe

Commits on Feb 21, 2019

• fix pdbbundle molecule type

  

  Chengxin Zhang

  committed
  4f50518

  Copy full SHA for 4f50518

• choose different molecule type

  

  Chengxin Zhang

  committed
  44206f9

  Copy full SHA for 44206f9

• Merge branch 'master' of https://github.com/kad-ecoli/python_scripts

  kad-ecoli

  committed
  26f7074

  Copy full SHA for 26f7074

• suport nucleic acid

  

  Chengxin Zhang

  committed
  a836b07

  Copy full SHA for a836b07

• fix bug in negative residue index

  

  Chengxin Zhang

  committed
  49b8685

  Copy full SHA for 49b8685

• fix empty contact map bug

  

  Chengxin Zhang

  committed
  cbaeff5

  Copy full SHA for cbaeff5

Commits on Nov 26, 2018

• fix undefined GO term issue in create_UNIPROT_GOterms.py

  kad-ecoli

  committed
  6245200

  Copy full SHA for 6245200

Commits on Jul 29, 2018

• add -infmt=pdb for contact_pdb

  kad-ecoli

  committed
  ce525a3

  Copy full SHA for ce525a3

• fix bug in argument parsing and add -outfmt=lnat in contact_pdb

  kad-ecoli

  committed
  001594d

  Copy full SHA for 001594d

Commits on Jul 28, 2018

• contact_pdb can read gzip file

  kad-ecoli

  committed
  a40029c

  Copy full SHA for a40029c

Commits on Jul 21, 2018

• contact_pdb can read from stdin

  

  Chengxin Zhang

  committed
  a389ac6

  Copy full SHA for a389ac6

Commits on May 10, 2018

• batch retrieve GO term annotations

  

  Chengxin Zhang

  committed
  f1e7e9f

  Copy full SHA for f1e7e9f

Commits on Apr 8, 2018

• fix bug in pgen template sequence

  

  Chengxin Zhang

  committed
  61632d6

  Copy full SHA for 61632d6

• fix template residue index in SPX

  kad-ecoli

  committed
  c0489bd

  Copy full SHA for c0489bd

• fix sequence bug in WWW

  kad-ecoli

  committed
  534c188

  Copy full SHA for 534c188

• fix bug when > is in middle of name

  kad-ecoli

  committed
  0c549c6

  Copy full SHA for 0c549c6

• add more maxSAS parameters

  kad-ecoli

  committed
  6052f6a

  Copy full SHA for 6052f6a

Commits on Jan 12, 2018

• make doc of PredNc kess confusing

  kad-ecoli

  committed
  c482da9

  Copy full SHA for c482da9

Commits on Jan 10, 2018

• add upper and lower bound for PredNc.py

  kad-ecoli

  committed
  1e20fb7

  Copy full SHA for 1e20fb7

Commits on Jan 3, 2018

• by default, do not use solv for contact num pred

  kad-ecoli

  committed
  6d7b579

  Copy full SHA for 6d7b579

Commits on Jan 2, 2018

• also print L

  kad-ecoli

  committed
  b273397

  Copy full SHA for b273397

• contact number estimation

  kad-ecoli

  committed
  a2ad01c

  Copy full SHA for a2ad01c

• pdb2sart print solvent accessibility

  kad-ecoli

  committed
  5b2392e

  Copy full SHA for 5b2392e

Commits on Dec 30, 2017

• -outfmt=stat by default

  kad-ecoli

  committed
  02c9a69

  Copy full SHA for 02c9a69

Commits on Nov 23, 2017

• residue number by secondary structure type

  kad-ecoli

  committed
  aa60280

  Copy full SHA for aa60280

• fix docstring

  kad-ecoli

  committed
  caf34a3

  Copy full SHA for caf34a3

• contact number calculation

  kad-ecoli

  committed
  54390bc

  Copy full SHA for 54390bc

Commits on Nov 18, 2017

• fix critical bug in alignment.fasta generation

  kad-ecoli

  committed
  58e6438

  Copy full SHA for 58e6438

• read from stdin

  kad-ecoli

  committed
  fca87f3

  Copy full SHA for fca87f3

Commits on Nov 17, 2017

• split multimodel PDB

  kad-ecoli

  committed
  2b3602e

  Copy full SHA for 2b3602e

Commits on Sep 24, 2017

• grep-GO and grep-uniprot consider word boundary in regexp

  kad-ecoli

  committed
  7a10278

  Copy full SHA for 7a10278